[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 15625.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
15625	7993511	NM_001004067	NOMO3		NODAL modulator 3

Fetching correlation data, please wait...
Getting list of correlations for id 15625.
Getting list of p-values for id 15625.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.092 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7993511	7993371	NM_001004067	NOMO3	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7993511	7999791	NM_001004067	NOMO3	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	7993511	8019250	NM_000918	P4HB	0.808646	1.789979e-25	3.101496e-21	1.033832e-21
4	7993511	7958644	NM_170665	ATP2A2	0.791781	8.737800e-24	1.513999e-19	3.784997e-20
5	7993511	7952557	NM_003139	SRPR	0.790553	1.143439e-23	1.981237e-19	3.962474e-20
6	7993511	7960594	NM_001273	CHD4	0.784271	4.404816e-23	7.632224e-19	1.272037e-19
7	7993511	7976876	NM_001376	DYNC1H1	0.783476	5.208356e-23	9.024518e-19	1.289217e-19
8	7993511	8160914	NM_007126	VCP	0.773001	4.439387e-22	7.692125e-18	9.615156e-19
9	7993511	8146142	NM_178819	AGPAT6	0.771369	6.134346e-22	1.062898e-17	1.180998e-18
10	7993511	8132592	NM_002541	OGDH	0.771086	6.487537e-22	1.124095e-17	1.124095e-18
11	7993511	8158783	NM_005085	NUP214	0.767501	1.306857e-21	2.264392e-17	2.058538e-18
12	7993511	8053909	NM_014014	SNRNP200	0.765919	1.773339e-21	3.072664e-17	2.560553e-18
13	7993511	7955908	NM_005337	NCKAP1L	0.762901	3.152705e-21	5.462691e-17	4.202070e-18
14	7993511	8164883	NM_033161	SURF4	0.762454	3.430512e-21	5.944048e-17	4.245749e-18
15	7993511	8005903	NM_003170	SUPT6H	0.761964	3.762796e-21	6.519796e-17	4.346531e-18
16	7993511	8072206	NM_005243	EWSR1	0.761573	4.050576e-21	7.018433e-17	4.386521e-18
17	7993511	8099340	NM_017491	WDR1	0.755278	1.299405e-20	2.251479e-16	1.324399e-17
18	7993511	8053890	NM_020151	STARD7	0.753371	1.837231e-20	3.183370e-16	1.768539e-17
19	7993511	7911619	NM_002074	GNB1	0.752305	2.226219e-20	3.857370e-16	2.030195e-17
20	7993511	8011542	NM_015113	ZZEF1	0.750021	3.349368e-20	5.803449e-16	2.901725e-17
21	7993511	8009164	NM_005828	DCAF7	0.748587	4.319062e-20	7.483639e-16	3.563638e-17
22	7993511	8002729	NR_027264	GLG1	0.748284	4.556502e-20	7.895051e-16	3.588659e-17
23	7993511	7949496	NM_005507	CFL1	0.747551	5.184691e-20	8.983514e-16	3.905876e-17
24	7993511	8074647	NM_058004	PI4KA	0.746944	5.767518e-20	9.993378e-16	4.163908e-17
25	7993511	8082408	NM_013336	SEC61A1	0.741479	1.485499e-19	2.573925e-15	1.029570e-16
26	7993511	8001693	NM_016284	CNOT1	0.739547	2.063636e-19	3.575662e-15	1.375254e-16
27	7993511	8056041			-0.737674	2.830676e-19	4.904713e-15	1.816560e-16
28	7993511	8172914	NM_031407	HUWE1	0.737178	3.076382e-19	5.330448e-15	1.903731e-16
29	7993511	7995344			-0.734258	5.002945e-19	8.668603e-15	2.989173e-16
30	7993511	8025697	NM_012218	ILF3	0.734093	5.141133e-19	8.908041e-15	2.969347e-16
31	7993511	8164607	NM_015033	FNBP1	0.733338	5.822932e-19	1.008939e-14	3.254643e-16
32	7993511	7927233	NM_015262	FAM21C	0.730697	8.974600e-19	1.555029e-14	4.859466e-16
33	7993511	8093685	NM_002111	HTT	0.728488	1.283459e-18	2.223850e-14	6.738939e-16
34	7993511	8015460	NM_001096	ACLY	0.728315	1.319865e-18	2.286930e-14	6.726264e-16
35	7993511	8172876	NM_006306	SMC1A	0.727871	1.417494e-18	2.456092e-14	7.017406e-16
36	7993511	8075728	NM_002473	MYH9	0.727838	1.425114e-18	2.469296e-14	6.859155e-16
37	7993511	8179504	NM_005104	BRD2	0.727686	1.460324e-18	2.530304e-14	6.838659e-16
38	7993511	8063394	NM_002827	PTPN1	0.727042	1.619171e-18	2.805537e-14	7.382991e-16
39	7993511	7989516	NM_003922	HERC1	0.725815	1.969914e-18	3.413270e-14	8.751975e-16
40	7993511	8008213	NM_007067	MYST2	0.725127	2.197770e-18	3.808076e-14	9.520189e-16
41	7993511	8171587	NM_000292	PHKA2	0.724965	2.255108e-18	3.907425e-14	9.530305e-16
42	7993511	7913001	NM_020765	UBR4	0.724508	2.424502e-18	4.200935e-14	1.000223e-15
43	7993511	8011141	NM_006445	PRPF8	0.724088	2.591023e-18	4.489466e-14	1.044062e-15
44	7993511	8013696	NM_014680	KIAA0100	0.723698	2.755680e-18	4.774766e-14	1.085174e-15
45	7993511	7965840			-0.722571	3.290769e-18	5.701916e-14	1.267092e-15
46	7993511	7944850	NM_032811	TBRG1	0.720899	4.275378e-18	7.407948e-14	1.610424e-15
47	7993511	8084439	NM_182917	EIF4G1	0.719242	5.530717e-18	9.583073e-14	2.038952e-15
48	7993511	8169806			-0.718961	5.776318e-18	1.000863e-13	2.085130e-15
49	7993511	8019762			0.718257	6.440112e-18	1.115878e-13	2.277303e-15
50	7993511	8010924	NM_001128159	VPS53	0.717976	6.724252e-18	1.165111e-13	2.330222e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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