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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 15960.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
15960 8019762 link to infopage

Fetching correlation data, please wait...
Getting list of correlations for id 15960.
Getting list of p-values for id 15960.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.101 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8019762 8019250 NM_000918 P4HB link to infopage 0.897177 2.430546e-38 4.211406e-34 4.211406e-34
2 8019762 8140828 NM_003130 SRI link to infopage 0.819975 1.051259e-26 1.821517e-22 9.107583e-23
3 8019762 7944285 NM_001655 ARCN1 link to infopage 0.819526 1.180537e-26 2.045516e-22 6.818385e-23
4 8019762 7975976 NM_012111 AHSA1 link to infopage 0.812531 6.920252e-26 1.199072e-21 2.997680e-22
5 8019762 8173729 NM_001029891 PGAM4 link to infopage 0.807635 2.284625e-25 3.958570e-21 7.917141e-22
6 8019762 8176282 NM_001029891 PGAM4 link to infopage 0.807635 2.284625e-25 3.958570e-21 6.597617e-22
7 8019762 8090490 NM_002950 RPN1 link to infopage 0.805399 3.896840e-25 6.752054e-21 9.645792e-22
8 8019762 7920515 NM_017582 UBE2Q1 link to infopage 0.805133 4.150530e-25 7.191623e-21 8.989529e-22
9 8019762 7965480 NM_002629 PGAM1 link to infopage 0.803415 6.223085e-25 1.078274e-20 1.198082e-21
10 8019762 8164607 NM_015033 FNBP1 link to infopage 0.801845 8.981260e-25 1.556183e-20 1.556183e-21
11 8019762 7936614 NM_003750 EIF3A link to infopage 0.799841 1.427523e-24 2.473469e-20 2.248608e-21
12 8019762 8132070 NM_002047 GARS link to infopage 0.796943 2.763761e-24 4.788768e-20 3.990640e-21
13 8019762 7929624 NM_002629 PGAM1 link to infopage 0.794791 4.483695e-24 7.768898e-20 5.976076e-21
14 8019762 7958152 NM_002629 PGAM1 link to infopage 0.794606 4.673681e-24 8.098088e-20 5.784348e-21
15 8019762 8160914 NM_007126 VCP link to infopage 0.792463 7.518496e-24 1.302730e-19 8.684865e-21
16 8019762 8042515 NM_006196 PCBP1 link to infopage 0.787781 2.085023e-23 3.612719e-19 2.257949e-20
17 8019762 8006392 NM_002815 PSMD11 link to infopage 0.787198 2.363304e-23 4.094897e-19 2.408763e-20
18 8019762 7952557 NM_003139 SRPR link to infopage 0.787112 2.407369e-23 4.171249e-19 2.317360e-20
19 8019762 8066668 NM_020967 NCOA5 link to infopage 0.785167 3.644669e-23 6.315118e-19 3.323746e-20
20 8019762 8083630 NM_024996 GFM1 link to infopage 0.785074 3.716960e-23 6.440377e-19 3.220189e-20
21 8019762 7933164 NM_004966 HNRNPF link to infopage 0.784559 4.145056e-23 7.182138e-19 3.420066e-20
22 8019762 8053890 NM_020151 STARD7 link to infopage 0.782142 6.888028e-23 1.193489e-18 5.424948e-20
23 8019762 8023063 NM_001001937 ATP5A1 link to infopage 0.780239 1.022618e-22 1.771890e-18 7.703871e-20
24 8019762 8104449 NM_012073 CCT5 link to infopage 0.780203 1.030208e-22 1.785041e-18 7.437671e-20
25 8019762 8002919 NM_001130089 KARS link to infopage 0.779068 1.301621e-22 2.255318e-18 9.021272e-20
26 8019762 8139706 NM_014302 SEC61G link to infopage 0.778241 1.542108e-22 2.672011e-18 1.027697e-19
27 8019762 8064502 NM_003091 SNRPB link to infopage 0.778241 1.542150e-22 2.672084e-18 9.896607e-20
28 8019762 7948997 NM_015459 ATL3 link to infopage 0.776743 2.092587e-22 3.625826e-18 1.294938e-19
29 8019762 8110169 NM_014613 FAF2 link to infopage 0.775508 2.686401e-22 4.654726e-18 1.605078e-19
30 8019762 8139421 NM_012412 H2AFV link to infopage 0.774912 3.028690e-22 5.247811e-18 1.749270e-19
31 8019762 8009227 NM_002805 PSMC5 link to infopage 0.773746 3.826438e-22 6.630069e-18 2.138732e-19
32 8019762 7980463 NM_012245 SNW1 link to infopage 0.773612 3.929504e-22 6.808651e-18 2.127704e-19
33 8019762 8115168 NM_018047 RBM22 link to infopage 0.771789 5.645984e-22 9.782797e-18 2.964484e-19
34 8019762 8101324 NM_031370 HNRNPD link to infopage 0.771590 5.872935e-22 1.017603e-17 2.992951e-19
35 8019762 7964466 NM_006400 DCTN2 link to infopage 0.770479 7.310230e-22 1.266644e-17 3.618982e-19
36 8019762 8116402 NM_139068 MAPK9 link to infopage 0.769889 8.208012e-22 1.422202e-17 3.950562e-19
37 8019762 8123524 NM_018303 EXOC2 link to infopage 0.769239 9.321266e-22 1.615096e-17 4.365124e-19
38 8019762 8147483 NM_178812 MTDH link to infopage 0.769057 9.658842e-22 1.673588e-17 4.404178e-19
39 8019762 8163784 NM_012164 FBXW2 link to infopage 0.766816 1.491988e-21 2.585168e-17 6.628635e-19
40 8019762 8072577 NM_003405 YWHAH link to infopage 0.766030 1.735740e-21 3.007517e-17 7.518792e-19
41 8019762 8099340 NM_017491 WDR1 link to infopage 0.765940 1.766060e-21 3.060053e-17 7.463543e-19
42 8019762 8022972 NM_000972 RPL7A link to infopage 0.765130 2.062848e-21 3.574296e-17 8.510229e-19
43 8019762 7896882 NM_001130413 SCNN1D link to infopage -0.763821 2.647937e-21 4.588081e-17 1.066995e-18
44 8019762 8072206 NM_005243 EWSR1 link to infopage 0.763643 2.738951e-21 4.745781e-17 1.078587e-18
45 8019762 8108015 NM_002154 HSPA4 link to infopage 0.763415 2.860423e-21 4.956255e-17 1.101390e-18
46 8019762 7948696 NM_004739 MTA2 link to infopage 0.763318 2.913156e-21 5.047626e-17 1.097310e-18
47 8019762 7927936 NM_004728 DDX21 link to infopage 0.760975 4.531497e-21 7.851725e-17 1.670580e-18
48 8019762 8168280 NM_001145408 NONO link to infopage 0.759796 5.648860e-21 9.787779e-17 2.039121e-18
49 8019762 7990211 NM_000520 HEXA link to infopage 0.758864 6.718500e-21 1.164114e-16 2.375744e-18
50 8019762 7978718 NM_006364 SEC23A link to infopage 0.758558 7.111073e-21 1.232136e-16 2.464271e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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