[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
9398	8116402	NM_139068	MAPK9		mitogen-activated protein kinase 9

Fetching correlation data, please wait...
Getting list of correlations for id 9398.
Getting list of p-values for id 9398.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.133 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8116402	8001211	NM_030790	ITFG1	0.841400	2.745207e-29	4.756621e-25	4.756621e-25
2	8116402	8132070	NM_002047	GARS	0.840022	4.130520e-29	7.156952e-25	3.578476e-25
3	8116402	8154531	NM_017925	DENND4C	0.835615	1.487119e-28	2.576730e-24	8.589101e-25
4	8116402	7948997	NM_015459	ATL3	0.832559	3.536408e-28	6.127534e-24	1.531883e-24
5	8116402	8173713	NM_032121	MAGT1	0.831189	5.185874e-28	8.985564e-24	1.797113e-24
6	8116402	8044849	NM_002830	PTPN4	0.830709	5.925951e-28	1.026790e-23	1.711316e-24
7	8116402	7924351	NM_004446	EPRS	0.830356	6.533742e-28	1.132101e-23	1.617288e-24
8	8116402	7957737	NM_001032283	TMPO	0.825938	2.179563e-27	3.776530e-23	4.720662e-24
9	8116402	8084971	NM_152699	SENP5	0.825736	2.301164e-27	3.987227e-23	4.430253e-24
10	8116402	8046604	NM_003659	AGPS	0.824957	2.835170e-27	4.912499e-23	4.912499e-24
11	8116402	7934852	NM_005271	GLUD1	0.823074	4.674541e-27	8.099577e-23	7.363251e-24
12	8116402	8052762	NM_002056	GFPT1	0.822484	5.461055e-27	9.462370e-23	7.885308e-24
13	8116402	8156718	NM_002486	NCBP1	0.821753	6.616044e-27	1.146362e-22	8.818169e-24
14	8116402	7989128	NM_144571	CNOT6L	0.821146	7.753543e-27	1.343456e-22	9.596117e-24
15	8116402	7915995	NM_007051	FAF1	0.821039	7.973601e-27	1.381586e-22	9.210572e-24
16	8116402	8128472	NM_006828	ASCC3	0.820997	8.059789e-27	1.396520e-22	8.728248e-24
17	8116402	8023195	NM_005901	SMAD2	0.819346	1.236683e-26	2.142800e-22	1.260471e-23
18	8116402	8072153	NM_173510	CCDC117	0.818033	1.732983e-26	3.002739e-22	1.668188e-23
19	8116402	7903239	NM_000028	AGL	0.817962	1.764799e-26	3.057867e-22	1.609404e-23
20	8116402	8148333	NM_015137	EFR3A	0.817551	1.959945e-26	3.395996e-22	1.697998e-23
21	8116402	8092564	NM_004593	TRA2B	0.817506	1.982631e-26	3.435305e-22	1.635859e-23
22	8116402	8152782	NM_014846	KIAA0196	0.817459	2.006762e-26	3.477116e-22	1.580507e-23
23	8116402	8052562	NM_006430	CCT4	0.817419	2.027031e-26	3.512236e-22	1.527059e-23
24	8116402	7971820	NM_016075	VPS36	0.816899	2.314262e-26	4.009922e-22	1.670801e-23
25	8116402	7969271	NM_001130912	SUGT1	0.814222	4.544034e-26	7.873447e-22	3.149379e-23
26	8116402	7932703	NM_145698	ACBD5	0.812925	6.276564e-26	1.087540e-21	4.182847e-23
27	8116402	8020058	NM_021074	NDUFV2	0.812039	7.814735e-26	1.354059e-21	5.015034e-23
28	8116402	7973902	NM_003136	SRP54	0.811872	8.142039e-26	1.410771e-21	5.038468e-23
29	8116402	7927936	NM_004728	DDX21	0.811780	8.329823e-26	1.443308e-21	4.976926e-23
30	8116402	7916443	NM_015306	USP24	0.810718	1.081099e-25	1.873220e-21	6.244068e-23
31	8116402	8104760	NM_152295	TARS	0.809974	1.296731e-25	2.246845e-21	7.247888e-23
32	8116402	8136631	NM_003143	SSBP1	0.809878	1.327296e-25	2.299806e-21	7.186894e-23
33	8116402	8093130	NM_152617	RNF168	0.809433	1.479185e-25	2.562983e-21	7.766615e-23
34	8116402	8083092	NM_001080412	ZBTB38	0.809140	1.588338e-25	2.752113e-21	8.094450e-23
35	8116402	8067295	NM_016045	SLMO2	0.809109	1.600381e-25	2.772980e-21	7.922801e-23
36	8116402	8174893	NM_001081550	THOC2	0.808792	1.727963e-25	2.994041e-21	8.316781e-23
37	8116402	8017235	NM_006380	APPBP2	0.808664	1.782324e-25	3.088234e-21	8.346577e-23
38	8116402	7904340	NM_006699	MAN1A2	0.807840	2.174479e-25	3.767720e-21	9.915052e-23
39	8116402	8114193	NM_001033503	SAR1B	0.807570	2.320512e-25	4.020751e-21	1.030962e-22
40	8116402	8092849	NM_024524	ATP13A3	0.807441	2.393600e-25	4.147392e-21	1.036848e-22
41	8116402	8094704	NM_005339	UBE2K	0.807263	2.498046e-25	4.328364e-21	1.055699e-22
42	8116402	8132943	NM_001762	CCT6A	0.807140	2.572917e-25	4.458093e-21	1.061451e-22
43	8116402	7906662	NM_016406	UFC1	0.805493	3.810979e-25	6.603283e-21	1.535647e-22
44	8116402	7969935	NM_000123	ERCC5	0.805449	3.851065e-25	6.672741e-21	1.516532e-22
45	8116402	8027416	NM_003796	C19orf2	0.805184	4.100537e-25	7.105000e-21	1.578889e-22
46	8116402	8083630	NM_024996	GFM1	0.804612	4.695789e-25	8.136393e-21	1.768781e-22
47	8116402	8041592	NM_019063	EML4	0.804108	5.287977e-25	9.162477e-21	1.949463e-22
48	8116402	8082607	NM_014382	ATP2C1	0.804062	5.346096e-25	9.263180e-21	1.929829e-22
49	8116402	7967386	NM_022782	MPHOSPH9	0.803525	6.064873e-25	1.050861e-20	2.144613e-22
50	8116402	8070341	NM_033656	BRWD1	0.803118	6.672592e-25	1.156160e-20	2.312320e-22

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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