Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5005	8083630	NM_024996	GFM1		G elongation factor, mitochondrial 1

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8083630	7936614	NM_003750	EIF3A		0.862862	2.722683e-32	4.717593e-28	4.717593e-28
2	8083630	7924351	NM_004446	EPRS		0.851383	1.260198e-30	2.183544e-26	1.091772e-26
3	8083630	8073799	NM_013236	ATXN10		0.843280	1.562109e-29	2.706666e-25	9.022221e-26
4	8083630	8091562	NM_020865	DHX36		0.842262	2.121614e-29	3.676121e-25	9.190302e-26
5	8083630	8134180	NM_019004	ANKIB1		0.842058	2.255509e-29	3.908121e-25	7.816241e-26
6	8083630	8087951	NM_018165	PBRM1		0.840632	3.448421e-29	5.975079e-25	9.958464e-26
7	8083630	8147483	NM_178812	MTDH		0.839658	4.598143e-29	7.967202e-25	1.138172e-25
8	8083630	7903239	NM_000028	AGL		0.839398	4.963416e-29	8.600111e-25	1.075014e-25
9	8083630	7926609	NM_005180	BMI1		0.839033	5.523489e-29	9.570549e-25	1.063394e-25
10	8083630	8154531	NM_017925	DENND4C		0.837266	9.243269e-29	1.601581e-24	1.601581e-25
11	8083630	7944285	NM_001655	ARCN1		0.832090	4.033180e-28	6.988291e-24	6.352992e-25
12	8083630	8092849	NM_024524	ATP13A3		0.831345	4.965499e-28	8.603721e-24	7.169767e-25
13	8083630	7930956	NM_007190	SEC23IP		0.831065	5.367359e-28	9.300022e-24	7.153863e-25
14	8083630	8059689	NM_005381	NCL		0.830127	6.960845e-28	1.206106e-23	8.615041e-25
15	8083630	8084971	NM_152699	SENP5		0.830083	7.046302e-28	1.220913e-23	8.139419e-25
16	8083630	8066668	NM_020967	NCOA5		0.829331	8.668456e-28	1.501983e-23	9.387396e-25
17	8083630	7927936	NM_004728	DDX21		0.829219	8.937424e-28	1.548588e-23	9.109338e-25
18	8083630	8132070	NM_002047	GARS		0.828943	9.641007e-28	1.670497e-23	9.280540e-25
19	8083630	8046604	NM_003659	AGPS		0.827860	1.296080e-27	2.245718e-23	1.181957e-24
20	8083630	8108015	NM_002154	HSPA4		0.827184	1.556967e-27	2.697757e-23	1.348878e-24
21	8083630	7934852	NM_005271	GLUD1		0.825118	2.715688e-27	4.705473e-23	2.240701e-24
22	8083630	8163275	NM_001080398	KIAA0368		0.823002	4.764301e-27	8.255104e-23	3.752320e-24
23	8083630	8023063	NM_001001937	ATP5A1		0.822626	5.260636e-27	9.115103e-23	3.963088e-24
24	8083630	7913571	NM_001102398	HNRNPR		0.822152	5.958438e-27	1.032418e-22	4.301744e-24
25	8083630	8103106	NM_006726	LRBA		0.821663	6.774803e-27	1.173870e-22	4.695480e-24
26	8083630	7980463	NM_012245	SNW1		0.821163	7.718876e-27	1.337450e-22	5.144037e-24
27	8083630	7915882	NM_014774	KIAA0494		0.821069	7.910164e-27	1.370594e-22	5.076275e-24
28	8083630	7903519	NM_018061	PRPF38B		0.820884	8.301815e-27	1.438455e-22	5.137341e-24
29	8083630	8047641	NM_177538	CYP20A1		0.820773	8.545929e-27	1.480753e-22	5.106045e-24
30	8083630	7984641	NM_005744	ARIH1		0.820399	9.418666e-27	1.631972e-22	5.439907e-24
31	8083630	8105778	NM_181523	PIK3R1		0.819392	1.222060e-26	2.117464e-22	6.830529e-24
32	8083630	7972190	NM_022118	RBM26		0.818555	1.516028e-26	2.626822e-22	8.208818e-24
33	8083630	7905099	NM_007259	VPS45		0.818546	1.519271e-26	2.632441e-22	7.977093e-24
34	8083630	8121209	NM_005604	POU3F2		-0.818367	1.590692e-26	2.756192e-22	8.106448e-24
35	8083630	7925531	NM_181690	AKT3		0.818070	1.716415e-26	2.974032e-22	8.497235e-24
36	8083630	7916562	NM_002136	HNRNPA1		0.817991	1.751670e-26	3.035119e-22	8.430887e-24
37	8083630	8129193	NM_001042475	C6orf204		0.817923	1.782347e-26	3.088273e-22	8.346685e-24
38	8083630	8006148	NM_004871	GOSR1		0.817678	1.897775e-26	3.288275e-22	8.653356e-24
39	8083630	7989128	NM_144571	CNOT6L		0.817645	1.913555e-26	3.315617e-22	8.501583e-24
40	8083630	8023195	NM_005901	SMAD2		0.817156	2.167832e-26	3.756203e-22	9.390506e-24
41	8083630	8081465	NM_001142568	BBX		0.817057	2.222877e-26	3.851580e-22	9.394097e-24
42	8083630	7927307	NM_001630	ANXA8L2		-0.816875	2.328426e-26	4.034464e-22	9.605866e-24
43	8083630	8160622	NM_018225	SMU1		0.816626	2.480217e-26	4.297471e-22	9.994120e-24
44	8083630	8146243	NM_032410	HOOK3		0.815802	3.055263e-26	5.293854e-22	1.203149e-23
45	8083630	8092564	NM_004593	TRA2B		0.815596	3.218428e-26	5.576570e-22	1.239238e-23
46	8083630	8117140	NM_017774	CDKAL1		0.815515	3.284527e-26	5.691100e-22	1.237196e-23
47	8083630	7971820	NM_016075	VPS36		0.815190	3.564257e-26	6.175789e-22	1.313998e-23
48	8083630	7969935	NM_000123	ERCC5		0.814887	3.846228e-26	6.664359e-22	1.388408e-23
49	8083630	8017235	NM_006380	APPBP2		0.814797	3.933993e-26	6.816430e-22	1.391108e-23
50	8083630	8158372	NM_003011	SET		0.814052	4.741197e-26	8.215072e-22	1.643014e-23

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.