[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
12282	7927936	NM_004728	DDX21		DEAD (Asp-Glu-Ala-Asp) box polypeptide 21

Fetching correlation data, please wait...
Getting list of correlations for id 12282.
Getting list of p-values for id 12282.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.164 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7927936	8092564	NM_004593	TRA2B	0.868493	3.648280e-33	6.321375e-29	6.321375e-29
2	7927936	8134180	NM_019004	ANKIB1	0.853097	7.257399e-31	1.257490e-26	6.287448e-27
3	7927936	7934852	NM_005271	GLUD1	0.847078	4.888383e-30	8.470101e-26	2.823367e-26
4	7927936	8023063	NM_001001937	ATP5A1	0.845351	8.321910e-30	1.441937e-25	3.604843e-26
5	7927936	8114455	NM_004134	HSPA9	0.845312	8.423196e-30	1.459487e-25	2.918974e-26
6	7927936	8174893	NM_001081550	THOC2	0.842967	1.716570e-29	2.974302e-25	4.957169e-26
7	7927936	7969935	NM_000123	ERCC5	0.842295	2.100658e-29	3.639809e-25	5.199728e-26
8	7927936	7954279	NM_153207	AEBP2	0.838613	6.246061e-29	1.082255e-24	1.352819e-25
9	7927936	8147483	NM_178812	MTDH	0.837605	8.378662e-29	1.451771e-24	1.613079e-25
10	7927936	8047641	NM_177538	CYP20A1	0.836867	1.037578e-28	1.797811e-24	1.797811e-25
11	7927936	7936614	NM_003750	EIF3A	0.836488	1.157147e-28	2.004989e-24	1.822717e-25
12	7927936	8123524	NM_018303	EXOC2	0.835998	1.332569e-28	2.308942e-24	1.924118e-25
13	7927936	7915995	NM_007051	FAF1	0.835618	1.485854e-28	2.574539e-24	1.980415e-25
14	7927936	8041592	NM_019063	EML4	0.835322	1.617343e-28	2.802371e-24	2.001693e-25
15	7927936	7971422	NM_015070	ZC3H13	0.835231	1.659653e-28	2.875680e-24	1.917120e-25
16	7927936	8028186	NM_007145	ZNF146	0.834959	1.793720e-28	3.107979e-24	1.942487e-25
17	7927936	8154531	NM_017925	DENND4C	0.834653	1.956872e-28	3.390671e-24	1.994513e-25
18	7927936	7924351	NM_004446	EPRS	0.834216	2.215691e-28	3.839129e-24	2.132849e-25
19	7927936	7995421	NM_031490	LONP2	0.832485	3.611483e-28	6.257617e-24	3.293482e-25
20	7927936	8027416	NM_003796	C19orf2	0.831886	4.270692e-28	7.399828e-24	3.699914e-25
21	7927936	7971820	NM_016075	VPS36	0.830324	6.591830e-28	1.142166e-23	5.438888e-25
22	7927936	8052562	NM_006430	CCT4	0.830066	7.078203e-28	1.226440e-23	5.574729e-25
23	7927936	7939137	NM_006360	EIF3M	0.829647	7.945031e-28	1.376635e-23	5.985371e-25
24	7927936	7903519	NM_018061	PRPF38B	0.829568	8.119896e-28	1.406934e-23	5.862226e-25
25	7927936	8108015	NM_002154	HSPA4	0.829254	8.853979e-28	1.534129e-23	6.136515e-25
26	7927936	8083630	NM_024996	GFM1	0.829219	8.937424e-28	1.548588e-23	5.956106e-25
27	7927936	7989253	NM_024755	SLTM	0.829101	9.233154e-28	1.599829e-23	5.925291e-25
28	7927936	8097262	NM_145207	SPATA5	0.829060	9.338169e-28	1.618025e-23	5.778659e-25
29	7927936	7953878	NM_001004419	CLEC2D	0.827040	1.619125e-27	2.805458e-23	9.673994e-25
30	7927936	7979223	NM_001160148	DDHD1	0.826378	1.936457e-27	3.355299e-23	1.118433e-24
31	7927936	8088151	NM_022899	ACTR8	0.826023	2.130468e-27	3.691462e-23	1.190794e-24
32	7927936	8018600	NM_014230	SRP68	0.825894	2.205669e-27	3.821763e-23	1.194301e-24
33	7927936	7990092	NM_006901	MYO9A	0.825455	2.481184e-27	4.299148e-23	1.302772e-24
34	7927936	8128472	NM_006828	ASCC3	0.824929	2.856108e-27	4.948779e-23	1.455523e-24
35	7927936	8059689	NM_005381	NCL	0.824237	3.435138e-27	5.952064e-23	1.700590e-24
36	7927936	8040142	NM_016207	CPSF3	0.823977	3.680846e-27	6.377802e-23	1.771612e-24
37	7927936	8111360	NM_016107	ZFR	0.822882	4.917491e-27	8.520537e-23	2.302848e-24
38	7927936	8088219	NM_001112736	C3orf63	0.822795	5.032432e-27	8.719694e-23	2.294656e-24
39	7927936	8157534	NM_007018	CEP110	0.822304	5.726609e-27	9.922495e-23	2.544230e-24
40	7927936	8136539	NM_016019	LUC7L2	0.822054	6.113745e-27	1.059329e-22	2.648321e-24
41	7927936	8128572	NM_002726	PREP	0.822049	6.122678e-27	1.060876e-22	2.587503e-24
42	7927936	8006148	NM_004871	GOSR1	0.821956	6.273496e-27	1.087009e-22	2.588116e-24
43	7927936	7903281	NM_012243	SLC35A3	0.821823	6.495758e-27	1.125520e-22	2.617488e-24
44	7927936	7917103	NM_015534	ZZZ3	0.821542	6.991121e-27	1.211351e-22	2.753072e-24
45	7927936	7989128	NM_144571	CNOT6L	0.821360	7.332151e-27	1.270442e-22	2.823204e-24
46	7927936	8087951	NM_018165	PBRM1	0.820981	8.094082e-27	1.402462e-22	3.048829e-24
47	7927936	8086077	NM_015097	CLASP2	0.820758	8.579527e-27	1.486575e-22	3.162925e-24
48	7927936	7946815	NM_002645	PIK3C2A	0.820185	9.955322e-27	1.724959e-22	3.593664e-24
49	7927936	8158372	NM_003011	SET	0.819436	1.208473e-26	2.093921e-22	4.273309e-24
50	7927936	8050658	NM_017552	ATAD2B	0.819428	1.210787e-26	2.097931e-22	4.195862e-24

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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