[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
12927	8066668	NM_020967	NCOA5		nuclear receptor coactivator 5

Fetching correlation data, please wait...
Getting list of correlations for id 12927.
Getting list of p-values for id 12927.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.173 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8066668	8132070	NM_002047	GARS	0.899085	9.737487e-39	1.687214e-34	1.687214e-34
2	8066668	8103106	NM_006726	LRBA	0.874493	3.857382e-34	6.683687e-30	3.341843e-30
3	8066668	8073799	NM_013236	ATXN10	0.869233	2.781577e-33	4.819639e-29	1.606546e-29
4	8066668	8110169	NM_014613	FAF2	0.863930	1.872600e-32	3.244654e-28	8.111634e-29
5	8066668	8054614	NM_022662	ANAPC1	0.857781	1.549620e-31	2.685027e-27	5.370054e-28
6	8066668	8023561	NM_005570	LMAN1	0.857508	1.697626e-31	2.941476e-27	4.902460e-28
7	8066668	8048120	NM_004044	ATIC	0.857458	1.726680e-31	2.991819e-27	4.274027e-28
8	8066668	8168280	NM_001145408	NONO	0.856017	2.789229e-31	4.832896e-27	6.041120e-28
9	8066668	8163733	NM_018249	CDK5RAP2	0.855827	2.970339e-31	5.146706e-27	5.718562e-28
10	8066668	7936614	NM_003750	EIF3A	0.855606	3.194793e-31	5.535617e-27	5.535617e-28
11	8066668	7898833	NM_001009999	KDM1A	0.854955	3.958464e-31	6.858830e-27	6.235300e-28
12	8066668	8006392	NM_002815	PSMD11	0.853160	7.111681e-31	1.232241e-26	1.026867e-27
13	8066668	8136539	NM_016019	LUC7L2	0.851583	1.182008e-30	2.048066e-26	1.575435e-27
14	8066668	8001666	NM_001896	CSNK2A2	0.851451	1.232838e-30	2.136138e-26	1.525813e-27
15	8066668	8147483	NM_178812	MTDH	0.850846	1.495695e-30	2.591591e-26	1.727727e-27
16	8066668	7915882	NM_014774	KIAA0494	0.849469	2.314273e-30	4.009941e-26	2.506213e-27
17	8066668	7944285	NM_001655	ARCN1	0.848803	2.853378e-30	4.944048e-26	2.908263e-27
18	8066668	8081465	NM_001142568	BBX	0.848584	3.056992e-30	5.296850e-26	2.942694e-27
19	8066668	7999562	NM_002582	PARN	0.847615	4.136329e-30	7.167018e-26	3.772115e-27
20	8066668	8018600	NM_014230	SRP68	0.847611	4.141939e-30	7.176738e-26	3.588369e-27
21	8066668	8083282	NM_032383	HPS3	0.845158	8.829559e-30	1.529898e-25	7.285227e-27
22	8066668	8164177	NM_001006617	MAPKAP1	0.845104	8.974661e-30	1.555039e-25	7.068361e-27
23	8066668	8136401	NM_015135	NUP205	0.843703	1.374647e-29	2.381851e-25	1.035587e-26
24	8066668	8154793	NM_002504	NFX1	0.843387	1.512390e-29	2.620518e-25	1.091882e-26
25	8066668	7930956	NM_007190	SEC23IP	0.842037	2.269455e-29	3.932284e-25	1.572914e-26
26	8066668	8163275	NM_001080398	KIAA0368	0.840280	3.826555e-29	6.630271e-25	2.550104e-26
27	8066668	8138030	NR_003085	PMS2	0.839692	4.551859e-29	7.887007e-25	2.921114e-26
28	8066668	8059689	NM_005381	NCL	0.839266	5.159382e-29	8.939662e-25	3.192736e-26
29	8066668	7936762	NM_001001976	ATE1	0.839019	5.546790e-29	9.610922e-25	3.314111e-26
30	8066668	8128956	NM_002037	FYN	0.838963	5.638913e-29	9.770545e-25	3.256848e-26
31	8066668	8101324	NM_031370	HNRNPD	0.838503	6.450872e-29	1.117743e-24	3.605621e-26
32	8066668	8109368	NM_005754	G3BP1	0.837607	8.374225e-29	1.451002e-24	4.534381e-26
33	8066668	8006850	NM_016507	CDK12	0.837001	9.981577e-29	1.729508e-24	5.240933e-26
34	8066668	8101376	NM_014933	SEC31A	0.836703	1.087681e-28	1.884624e-24	5.543012e-26
35	8066668	7915130	NM_006802	SF3A3	0.835558	1.511576e-28	2.619108e-24	7.483165e-26
36	8066668	8042335	NM_003375	VDAC2	0.835395	1.583674e-28	2.744033e-24	7.622313e-26
37	8066668	7925364	NM_018072	HEATR1	0.835288	1.632780e-28	2.829118e-24	7.646265e-26
38	8066668	7975725	NM_019589	YLPM1	0.834906	1.821277e-28	3.155727e-24	8.304546e-26
39	8066668	7916443	NM_015306	USP24	0.834409	2.097700e-28	3.634685e-24	9.319704e-26
40	8066668	8009382	NM_004459	BPTF	0.833893	2.428487e-28	4.207839e-24	1.051960e-25
41	8066668	8133504	NM_032999	GTF2I	0.832698	3.400977e-28	5.892873e-24	1.437286e-25
42	8066668	8047641	NM_177538	CYP20A1	0.832099	4.023418e-28	6.971376e-24	1.659851e-25
43	8066668	8178322	NM_006937	SUMO2	0.831863	4.298326e-28	7.447710e-24	1.732026e-25
44	8066668	8161192	NM_194328	RNF38	0.831760	4.423326e-28	7.664296e-24	1.741886e-25
45	8066668	8134180	NM_019004	ANKIB1	0.831197	5.174724e-28	8.966245e-24	1.992499e-25
46	8066668	8154531	NM_017925	DENND4C	0.831108	5.303956e-28	9.190165e-24	1.997862e-25
47	8066668	8087951	NM_018165	PBRM1	0.830661	6.005423e-28	1.040560e-23	2.213957e-25
48	8066668	7931187	NM_004725	BUB3	0.830580	6.140833e-28	1.064022e-23	2.216713e-25
49	8066668	7978718	NM_006364	SEC23A	0.830444	6.376435e-28	1.104845e-23	2.254785e-25
50	8066668	8096556	NM_015143	METAP1	0.830030	7.149827e-28	1.238851e-23	2.477701e-25

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation