[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
15835	8109368	NM_005754	G3BP1		GTPase activating protein (SH3 domain) binding protein 1

Fetching correlation data, please wait...
Getting list of correlations for id 15835.
Getting list of p-values for id 15835.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.139 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8109368	8168280	NM_001145408	NONO	0.899072	9.798465e-39	1.697780e-34	1.697780e-34
2	8109368	8018600	NM_014230	SRP68	0.895930	4.379203e-38	7.587845e-34	3.793923e-34
3	8109368	7995421	NM_031490	LONP2	0.895487	5.387181e-38	9.334368e-34	3.111456e-34
4	8109368	7924351	NM_004446	EPRS	0.895457	5.462865e-38	9.465506e-34	2.366377e-34
5	8109368	8114455	NM_004134	HSPA9	0.893996	1.074488e-37	1.861766e-33	3.723531e-34
6	8109368	8171516	NM_002893	RBBP7	0.889003	1.009329e-36	1.748864e-32	2.914773e-33
7	8109368	8135576	NM_015641	TES	0.878552	7.898387e-35	1.368554e-30	1.955077e-31
8	8109368	7925364	NM_018072	HEATR1	0.877975	9.929188e-35	1.720430e-30	2.150538e-31
9	8109368	8048120	NM_004044	ATIC	0.877644	1.131785e-34	1.961044e-30	2.178938e-31
10	8109368	7931187	NM_004725	BUB3	0.877427	1.232683e-34	2.135869e-30	2.135869e-31
11	8109368	8059689	NM_005381	NCL	0.873687	5.251049e-34	9.098493e-30	8.271357e-31
12	8109368	7904254	NM_000701	ATP1A1	0.873249	6.204942e-34	1.075130e-29	8.959419e-31
13	8109368	7955646	NM_001417	EIF4B	0.872656	7.769518e-34	1.346224e-29	1.035557e-30
14	8109368	8103106	NM_006726	LRBA	0.872451	8.394713e-34	1.454552e-29	1.038966e-30
15	8109368	7981032	NM_020414	DDX24	0.872160	9.368195e-34	1.623227e-29	1.082151e-30
16	8109368	7899774	NM_004964	HDAC1	0.872059	9.729433e-34	1.685819e-29	1.053637e-30
17	8109368	8092564	NM_004593	TRA2B	0.870869	1.518978e-33	2.631934e-29	1.548196e-30
18	8109368	8114396	NM_004661	CDC23	0.868320	3.885969e-33	6.733219e-29	3.740677e-30
19	8109368	8006392	NM_002815	PSMD11	0.866468	7.595591e-33	1.316088e-28	6.926780e-30
20	8109368	8047641	NM_177538	CYP20A1	0.865555	1.053043e-32	1.824607e-28	9.123036e-30
21	8109368	7934852	NM_005271	GLUD1	0.864956	1.302947e-32	2.257615e-28	1.075055e-29
22	8109368	8054614	NM_022662	ANAPC1	0.864270	1.661090e-32	2.878170e-28	1.308259e-29
23	8109368	8040985	NM_032434	ZNF512	0.863317	2.322476e-32	4.024155e-28	1.749633e-29
24	8109368	8163023	NM_003640	IKBKAP	0.862437	3.158185e-32	5.472187e-28	2.280078e-29
25	8109368	8101376	NM_014933	SEC31A	0.862046	3.616337e-32	6.266027e-28	2.506411e-29
26	8109368	8055060	NM_018383	WDR33	0.861467	4.419295e-32	7.657313e-28	2.945120e-29
27	8109368	8006573	NM_139215	TAF15	0.860587	5.982189e-32	1.036534e-27	3.839014e-29
28	8109368	8101340	NR_003249	HNRPDL	0.860319	6.556903e-32	1.136115e-27	4.057552e-29
29	8109368	7967149	NM_016237	ANAPC5	0.859324	9.202850e-32	1.594578e-27	5.498544e-29
30	8109368	8023063	NM_001001937	ATP5A1	0.859223	9.524731e-32	1.650350e-27	5.501167e-29
31	8109368	8162313	NM_013417	IARS	0.857276	1.834827e-31	3.179205e-27	1.025550e-28
32	8109368	8001666	NM_001896	CSNK2A2	0.857024	1.995949e-31	3.458381e-27	1.080744e-28
33	8109368	8164177	NM_001006617	MAPKAP1	0.856927	2.061253e-31	3.571534e-27	1.082283e-28
34	8109368	8132070	NM_002047	GARS	0.854139	5.171375e-31	8.960442e-27	2.635424e-28
35	8109368	8136539	NM_016019	LUC7L2	0.853964	5.474923e-31	9.486399e-27	2.710400e-28
36	8109368	7939137	NM_006360	EIF3M	0.853720	5.927578e-31	1.027071e-26	2.852976e-28
37	8109368	8042720	NM_006429	CCT7	0.853622	6.119641e-31	1.060350e-26	2.865811e-28
38	8109368	8025429	NM_005968	HNRNPM	0.853208	7.000416e-31	1.212962e-26	3.192005e-28
39	8109368	7920317	NM_004515	ILF2	0.852437	8.982504e-31	1.556399e-26	3.990765e-28
40	8109368	7995574	NM_002136	HNRNPA1	0.851592	1.178612e-30	2.042182e-26	5.105454e-28
41	8109368	8022814	NM_002136	HNRNPA1	0.851485	1.219464e-30	2.112965e-26	5.153572e-28
42	8109368	7953878	NM_001004419	CLEC2D	0.850972	1.436556e-30	2.489121e-26	5.926478e-28
43	8109368	8128956	NM_002037	FYN	0.850699	1.567127e-30	2.715362e-26	6.314795e-28
44	8109368	8064351	NM_177559	CSNK2A1	0.850005	1.953577e-30	3.384963e-26	7.693098e-28
45	8109368	7915130	NM_006802	SF3A3	0.849677	2.167364e-30	3.755391e-26	8.345314e-28
46	8109368	7974835	NM_006255	PRKCH	0.849611	2.212533e-30	3.833656e-26	8.334034e-28
47	8109368	8073457	NM_001469	XRCC6	0.849327	2.419957e-30	4.193060e-26	8.921404e-28
48	8109368	7999520	NM_015659	RSL1D1	0.849166	2.546038e-30	4.411520e-26	9.190667e-28
49	8109368	8087874	NM_025222	WDR82	0.849145	2.562741e-30	4.440461e-26	9.062166e-28
50	8109368	8062349	NM_002951	RPN2	0.848104	3.552048e-30	6.154633e-26	1.230927e-27

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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