[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
13133	8164177	NM_001006617	MAPKAP1		mitogen-activated protein kinase associated protein 1

Fetching correlation data, please wait...
Getting list of correlations for id 13133.
Getting list of p-values for id 13133.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.156 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8164177	8006392	NM_002815	PSMD11	0.893858	1.144854e-37	1.983689e-33	1.983689e-33
2	8164177	7944285	NM_001655	ARCN1	0.886478	3.008206e-36	5.212319e-32	2.606159e-32
3	8164177	8101376	NM_014933	SEC31A	0.884937	5.786523e-36	1.002631e-31	3.342103e-32
4	8164177	7993680	BC050464	C16orf62	0.883239	1.176754e-35	2.038962e-31	5.097404e-32
5	8164177	8018600	NM_014230	SRP68	0.873723	5.180243e-34	8.975807e-30	1.795161e-30
6	8164177	8025429	NM_005968	HNRNPM	0.870317	1.864787e-33	3.231117e-29	5.385195e-30
7	8164177	8128956	NM_002037	FYN	0.870058	2.052406e-33	3.556204e-29	5.080291e-30
8	8164177	8087951	NM_018165	PBRM1	0.866717	6.946117e-33	1.203554e-28	1.504442e-29
9	8164177	7975863	NM_017926	C14orf118	0.866273	8.145905e-33	1.411441e-28	1.568268e-29
10	8164177	8132070	NM_002047	GARS	0.866242	8.237573e-33	1.427324e-28	1.427324e-29
11	8164177	8135576	NM_015641	TES	0.865518	1.066986e-32	1.848766e-28	1.680697e-29
12	8164177	8154793	NM_002504	NFX1	0.864674	1.439978e-32	2.495050e-28	2.079209e-29
13	8164177	8164607	NM_015033	FNBP1	0.864403	1.585034e-32	2.746388e-28	2.112607e-29
14	8164177	8171516	NM_002893	RBBP7	0.864383	1.596094e-32	2.765552e-28	1.975394e-29
15	8164177	8006148	NM_004871	GOSR1	0.864216	1.692971e-32	2.933411e-28	1.955607e-29
16	8164177	8101324	NM_031370	HNRNPD	0.863358	2.289560e-32	3.967120e-28	2.479450e-29
17	8164177	8100251	NM_015030	FRYL	0.863153	2.459387e-32	4.261381e-28	2.506694e-29
18	8164177	7978718	NM_006364	SEC23A	0.861896	3.810533e-32	6.602511e-28	3.668062e-29
19	8164177	8163023	NM_003640	IKBKAP	0.860182	6.871713e-32	1.190662e-27	6.266641e-29
20	8164177	8134180	NM_019004	ANKIB1	0.859511	8.638339e-32	1.496765e-27	7.483825e-29
21	8164177	7990487	NM_015477	SIN3A	0.859381	9.027332e-32	1.564166e-27	7.448408e-29
22	8164177	8152782	NM_014846	KIAA0196	0.858788	1.103586e-31	1.912184e-27	8.691745e-29
23	8164177	8109368	NM_005754	G3BP1	0.856927	2.061253e-31	3.571534e-27	1.552841e-28
24	8164177	8161988	NM_013438	UBQLN1	0.856874	2.098036e-31	3.635267e-27	1.514695e-28
25	8164177	8163784	NM_012164	FBXW2	0.856649	2.261216e-31	3.918008e-27	1.567203e-28
26	8164177	8114455	NM_004134	HSPA9	0.856008	2.797776e-31	4.847707e-27	1.864503e-28
27	8164177	8068289	NM_138927	SON	0.855893	2.906095e-31	5.035390e-27	1.864959e-28
28	8164177	7999562	NM_002582	PARN	0.855138	3.727256e-31	6.458217e-27	2.306506e-28
29	8164177	8050908	NM_000182	HADHA	0.854477	4.630515e-31	8.023293e-27	2.766653e-28
30	8164177	7980463	NM_012245	SNW1	0.854273	4.950644e-31	8.577982e-27	2.859327e-28
31	8164177	8147483	NM_178812	MTDH	0.853939	5.519288e-31	9.563271e-27	3.084926e-28
32	8164177	8018315	NM_006937	SUMO2	0.853438	6.497674e-31	1.125852e-26	3.518287e-28
33	8164177	8021228	NM_005359	SMAD4	0.853201	7.016150e-31	1.215688e-26	3.683904e-28
34	8164177	7995421	NM_031490	LONP2	0.852448	8.950297e-31	1.550818e-26	4.561229e-28
35	8164177	7934852	NM_005271	GLUD1	0.852245	9.555368e-31	1.655659e-26	4.730453e-28
36	8164177	8014551	NM_007247	SYNRG	0.852142	9.877859e-31	1.711537e-26	4.754268e-28
37	8164177	7988581	NM_014701	SECISBP2L	0.851941	1.053765e-30	1.825859e-26	4.934754e-28
38	8164177	8023195	NM_005901	SMAD2	0.850977	1.434406e-30	2.485395e-26	6.540512e-28
39	8164177	8006850	NM_016507	CDK12	0.850672	1.580806e-30	2.739062e-26	7.023236e-28
40	8164177	8136539	NM_016019	LUC7L2	0.849972	1.974183e-30	3.420667e-26	8.551667e-28
41	8164177	8063242	NM_006420	ARFGEF2	0.849521	2.276353e-30	3.944237e-26	9.620089e-28
42	8164177	7943176	NM_004268	MED17	0.849026	2.661054e-30	4.610808e-26	1.097812e-27
43	8164177	8164155	NM_001123355	PPP6C	0.848223	3.421945e-30	5.929204e-26	1.378885e-27
44	8164177	7989253	NM_024755	SLTM	0.846975	5.046589e-30	8.744225e-26	1.987324e-27
45	8164177	8050278	NM_005742	PDIA6	0.846085	6.643426e-30	1.151106e-25	2.558014e-27
46	8164177	8066668	NM_020967	NCOA5	0.845104	8.974661e-30	1.555039e-25	3.380521e-27
47	8164177	8100834	NM_002092	GRSF1	0.844753	9.991905e-30	1.731297e-25	3.683612e-27
48	8164177	8128572	NM_002726	PREP	0.844388	1.116561e-29	1.934664e-25	4.030551e-27
49	8164177	8083282	NM_032383	HPS3	0.843753	1.353816e-29	2.345757e-25	4.787260e-27
50	8164177	8071547	NM_198157	UBE2L3	0.843070	1.664378e-29	2.883867e-25	5.767734e-27

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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