[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
10500	7993680	BC050464	C16orf62		chromosome 16 open reading frame 62

Fetching correlation data, please wait...
Getting list of correlations for id 10500.
Getting list of p-values for id 10500.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.140 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7993680	8164177	NM_001006617	MAPKAP1	0.883239	1.176754e-35	2.038962e-31	2.038962e-31
2	7993680	8050908	NM_000182	HADHA	0.872147	9.411584e-34	1.630745e-29	8.153726e-30
3	7993680	8021228	NM_005359	SMAD4	0.866002	8.976581e-33	1.555372e-28	5.184574e-29
4	7993680	8064351	NM_177559	CSNK2A1	0.859594	8.397425e-32	1.455022e-27	3.637555e-28
5	7993680	8101376	NM_014933	SEC31A	0.857990	1.444283e-31	2.502509e-27	5.005019e-28
6	7993680	8018600	NM_014230	SRP68	0.857080	1.958896e-31	3.394179e-27	5.656965e-28
7	7993680	8025429	NM_005968	HNRNPM	0.856070	2.740986e-31	4.749306e-27	6.784723e-28
8	7993680	8006392	NM_002815	PSMD11	0.852235	9.585133e-31	1.660816e-26	2.076020e-27
9	7993680	8009205	NM_007372	DDX42	0.851454	1.231625e-30	2.134037e-26	2.371152e-27
10	7993680	8062349	NM_002951	RPN2	0.843596	1.419810e-29	2.460104e-25	2.460104e-26
11	7993680	8163023	NM_003640	IKBKAP	0.842207	2.157090e-29	3.737589e-25	3.397809e-26
12	7993680	8154793	NM_002504	NFX1	0.840494	3.592428e-29	6.224600e-25	5.187167e-26
13	7993680	7934852	NM_005271	GLUD1	0.840279	3.828689e-29	6.633970e-25	5.103054e-26
14	7993680	8152782	NM_014846	KIAA0196	0.837016	9.936409e-29	1.721682e-24	1.229773e-25
15	7993680	8018315	NM_006937	SUMO2	0.836800	1.057826e-28	1.832895e-24	1.221930e-25
16	7993680	8068289	NM_138927	SON	0.835517	1.529574e-28	2.650292e-24	1.656433e-25
17	7993680	8050278	NM_005742	PDIA6	0.835152	1.697798e-28	2.941775e-24	1.730456e-25
18	7993680	7931728	NM_015155	LARP4B	0.834787	1.883781e-28	3.264028e-24	1.813349e-25
19	7993680	8105153	NM_012343	NNT	0.833410	2.783199e-28	4.822449e-24	2.538131e-25
20	7993680	7944285	NM_001655	ARCN1	0.833132	3.010213e-28	5.215796e-24	2.607898e-25
21	7993680	8087951	NM_018165	PBRM1	0.832970	3.150901e-28	5.459566e-24	2.599793e-25
22	7993680	7978718	NM_006364	SEC23A	0.832413	3.684889e-28	6.384807e-24	2.902185e-25
23	7993680	7930498	NM_016234	ACSL5	0.832277	3.827823e-28	6.632469e-24	2.883682e-25
24	7993680	8083282	NM_032383	HPS3	0.831379	4.918389e-28	8.522093e-24	3.550872e-25
25	7993680	8164155	NM_001123355	PPP6C	0.828457	1.101343e-27	1.908297e-23	7.633189e-25
26	7993680	8163275	NM_001080398	KIAA0368	0.828010	1.244159e-27	2.155754e-23	8.291361e-25
27	7993680	7990487	NM_015477	SIN3A	0.827817	1.311137e-27	2.271807e-23	8.414100e-25
28	7993680	7907024	NM_017542	POGK	0.827497	1.430569e-27	2.478746e-23	8.852664e-25
29	7993680	8045090	NM_020120	UGGT1	0.825604	2.384534e-27	4.131681e-23	1.424718e-24
30	7993680	8101324	NM_031370	HNRNPD	0.825365	2.541813e-27	4.404200e-23	1.468067e-24
31	7993680	8114455	NM_004134	HSPA9	0.825129	2.707697e-27	4.691627e-23	1.513428e-24
32	7993680	8160914	NM_007126	VCP	0.825111	2.720901e-27	4.714505e-23	1.473283e-24
33	7993680	8109368	NM_005754	G3BP1	0.824941	2.847028e-27	4.933045e-23	1.494862e-24
34	7993680	7999562	NM_002582	PARN	0.823220	4.498604e-27	7.794731e-23	2.292568e-24
35	7993680	8147447	NM_014754	PTDSS1	0.823067	4.683611e-27	8.115293e-23	2.318655e-24
36	7993680	8027592	NM_001114093	LSM14A	0.822801	5.023548e-27	8.704301e-23	2.417861e-24
37	7993680	8090091	NM_198402	PTPLB	0.821904	6.359610e-27	1.101930e-22	2.978188e-24
38	7993680	8061186	NM_006363	SEC23B	0.821633	6.827410e-27	1.182985e-22	3.113119e-24
39	7993680	7943176	NM_004268	MED17	0.821326	7.398493e-27	1.281937e-22	3.287018e-24
40	7993680	8163784	NM_012164	FBXW2	0.821266	7.514133e-27	1.301974e-22	3.254935e-24
41	7993680	8171516	NM_002893	RBBP7	0.821081	7.885654e-27	1.366347e-22	3.332554e-24
42	7993680	7920317	NM_004515	ILF2	0.820929	8.205205e-27	1.421716e-22	3.385038e-24
43	7993680	7947694	NM_001008938	CKAP5	0.820666	8.786823e-27	1.522493e-22	3.540681e-24
44	7993680	7944991	NM_152713	STT3A	0.820443	9.310337e-27	1.613202e-22	3.666369e-24
45	7993680	8018922	NM_004762	CYTH1	0.820229	9.841849e-27	1.705297e-22	3.789549e-24
46	7993680	7931187	NM_004725	BUB3	0.819204	1.282963e-26	2.222990e-22	4.832586e-24
47	7993680	7930956	NM_007190	SEC23IP	0.817985	1.754310e-26	3.039693e-22	6.467433e-24
48	7993680	7955908	NM_005337	NCKAP1L	0.817246	2.118657e-26	3.670996e-22	7.647909e-24
49	7993680	8048847	NM_001135187	AGFG1	0.816652	2.463860e-26	4.269130e-22	8.712511e-24
50	7993680	7990211	NM_000520	HEXA	0.815741	3.102721e-26	5.376084e-22	1.075217e-23

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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