[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
14146	8061186	NM_006363	SEC23B		Sec23 homolog B (S. cerevisiae)

Fetching correlation data, please wait...
Getting list of correlations for id 14146.
Getting list of p-values for id 14146.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.150 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8061186	8006392	NM_002815	PSMD11	0.862667	2.914657e-32	5.050227e-28	5.050227e-28
2	8061186	7987172	NM_020154	C15orf24	0.857393	1.764731e-31	3.057749e-27	1.528875e-27
3	8061186	8045090	NM_020120	UGGT1	0.857248	1.852032e-31	3.209016e-27	1.069672e-27
4	8061186	8163784	NM_012164	FBXW2	0.850640	1.597121e-30	2.767331e-26	6.918327e-27
5	8061186	7906703	NM_004550	NDUFS2	0.848357	3.281681e-30	5.686169e-26	1.137234e-26
6	8061186	8048847	NM_001135187	AGFG1	0.844708	1.012873e-29	1.755005e-25	2.925009e-26
7	8061186	7900119	NM_005119	THRAP3	0.843522	1.452072e-29	2.516005e-25	3.594293e-26
8	8061186	8040639	NM_000183	HADHB	0.842788	1.811497e-29	3.138780e-25	3.923475e-26
9	8061186	8050278	NM_005742	PDIA6	0.840883	3.200818e-29	5.546058e-25	6.162286e-26
10	8061186	8101324	NM_031370	HNRNPD	0.840347	3.752334e-29	6.501668e-25	6.501668e-26
11	8061186	7899504	NM_006582	GMEB1	0.839823	4.379598e-29	7.588530e-25	6.898663e-26
12	8061186	7944285	NM_001655	ARCN1	0.839514	4.796942e-29	8.311661e-25	6.926384e-26
13	8061186	8050908	NM_000182	HADHA	0.836118	1.287315e-28	2.230531e-24	1.715793e-25
14	8061186	8018600	NM_014230	SRP68	0.831433	4.845275e-28	8.395408e-24	5.996720e-25
15	8061186	7947894	NM_198700	CELF1	0.830752	5.854987e-28	1.014494e-23	6.763290e-25
16	8061186	7907702	NM_003101	SOAT1	0.829501	8.271934e-28	1.433278e-23	8.957988e-25
17	8061186	8094704	NM_005339	UBE2K	0.828618	1.053933e-27	1.826150e-23	1.074206e-24
18	8061186	8150797	NM_015941	ATP6V1H	0.828603	1.058111e-27	1.833389e-23	1.018550e-24
19	8061186	7980463	NM_012245	SNW1	0.828379	1.125091e-27	1.949445e-23	1.026024e-24
20	8061186	8007885	NM_006178	NSF	0.828067	1.224903e-27	2.122389e-23	1.061194e-24
21	8061186	8001185	NM_005880	DNAJA2	0.826830	1.713951e-27	2.969763e-23	1.414173e-24
22	8061186	8075130	NM_012399	PITPNB	0.826806	1.725134e-27	2.989140e-23	1.358700e-24
23	8061186	8082478	NM_016128	COPG	0.826491	1.878201e-27	3.254360e-23	1.414939e-24
24	8061186	7975863	NM_017926	C14orf118	0.826333	1.959925e-27	3.395963e-23	1.414984e-24
25	8061186	7959282	NM_194271	RNF34	0.826116	2.077883e-27	3.600349e-23	1.440139e-24
26	8061186	7999233	NM_032569	GLYR1	0.825494	2.455602e-27	4.254821e-23	1.636470e-24
27	8061186	7963935	NM_032364	DNAJC14	0.825361	2.544793e-27	4.409363e-23	1.633097e-24
28	8061186	8160914	NM_007126	VCP	0.824953	2.837890e-27	4.917211e-23	1.756147e-24
29	8061186	7952557	NM_003139	SRPR	0.823353	4.342835e-27	7.524831e-23	2.594769e-24
30	8061186	8025429	NM_005968	HNRNPM	0.823044	4.712448e-27	8.165258e-23	2.721753e-24
31	8061186	7913169	NM_004930	CAPZB	0.822694	5.167079e-27	8.952998e-23	2.888064e-24
32	8061186	7978718	NM_006364	SEC23A	0.821746	6.627676e-27	1.148377e-22	3.588680e-24
33	8061186	7993680	BC050464	C16orf62	0.821633	6.827410e-27	1.182985e-22	3.584804e-24
34	8061186	8164165	NM_005347	HSPA5	0.821168	7.709114e-27	1.335758e-22	3.928700e-24
35	8061186	7997168	NM_014761	KIAA0174	0.820178	9.973161e-27	1.728050e-22	4.937285e-24
36	8061186	8164177	NM_001006617	MAPKAP1	0.820039	1.033943e-26	1.791512e-22	4.976423e-24
37	8061186	8148674	NM_139021	MAPK15	-0.819705	1.127385e-26	1.953420e-22	5.279514e-24
38	8061186	7945132	NM_002017	FLI1	0.818817	1.417170e-26	2.455530e-22	6.461921e-24
39	8061186	8063369	NM_018683	RNF114	0.818405	1.575541e-26	2.729941e-22	6.999848e-24
40	8061186	8171516	NM_002893	RBBP7	0.816581	2.508818e-26	4.347029e-22	1.086757e-23
41	8061186	7948814	NM_001079559	HNRNPUL2	0.815117	3.630289e-26	6.290202e-22	1.534196e-23
42	8061186	8027592	NM_001114093	LSM14A	0.814350	4.400343e-26	7.624474e-22	1.815351e-23
43	8061186	7899361	NM_177424	STX12	0.813956	4.856071e-26	8.414115e-22	1.956771e-23
44	8061186	8148703	NM_198572	SPATC1	-0.813776	5.079334e-26	8.800961e-22	2.000219e-23
45	8061186	7940051	NM_015457	ZDHHC5	0.813404	5.572598e-26	9.655640e-22	2.145698e-23
46	8061186	7924526	NM_005426	TP53BP2	0.812617	6.774249e-26	1.173774e-21	2.551683e-23
47	8061186	7967240	NM_022916	VPS33A	0.812529	6.923607e-26	1.199653e-21	2.552454e-23
48	8061186	8018315	NM_006937	SUMO2	0.810866	1.042842e-25	1.806932e-21	3.764441e-23
49	8061186	8080923	NM_002802	PSMC1	0.810053	1.272041e-25	2.204065e-21	4.498093e-23
50	8061186	8015490	NM_003315	DNAJC7	0.809503	1.454344e-25	2.519942e-21	5.039883e-23

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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