[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
13927	7999233	NM_032569	GLYR1		glyoxylate reductase 1 homolog (Arabidopsis)

Fetching correlation data, please wait...
Getting list of correlations for id 13927.
Getting list of p-values for id 13927.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.134 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7999233	8006392	NM_002815	PSMD11	0.843839	1.319167e-29	2.285721e-25	2.285721e-25
2	7999233	7947894	NM_198700	CELF1	0.837490	8.661614e-29	1.500798e-24	7.503989e-25
3	7999233	7906703	NM_004550	NDUFS2	0.827826	1.308144e-27	2.266621e-23	7.555404e-24
4	7999233	7962869	NM_004818	DDX23	0.827701	1.353168e-27	2.344634e-23	5.861586e-24
5	7999233	8082478	NM_016128	COPG	0.827415	1.462650e-27	2.534333e-23	5.068666e-24
6	7999233	8061186	NM_006363	SEC23B	0.825494	2.455602e-27	4.254821e-23	7.091369e-24
7	7999233	7978208	NM_012461	TINF2	0.825155	2.689186e-27	4.659552e-23	6.656503e-24
8	7999233	7928171	NM_003901	SGPL1	0.822187	5.905082e-27	1.023173e-22	1.278967e-23
9	7999233	8077550	NM_001077525	MTMR14	0.822109	6.027141e-27	1.044323e-22	1.160358e-23
10	7999233	7948814	NM_001079559	HNRNPUL2	0.814146	4.630305e-26	8.022929e-22	8.022929e-23
11	7999233	7963935	NM_032364	DNAJC14	0.813915	4.906138e-26	8.500866e-22	7.728060e-23
12	7999233	7967841	NM_001161344	CHFR	0.813345	5.654696e-26	9.797892e-22	8.164910e-23
13	7999233	7925851	NM_014023	WDR37	0.812841	6.408334e-26	1.110372e-21	8.541323e-23
14	7999233	7956593	NM_006812	OS9	0.811946	7.996281e-26	1.385516e-21	9.896540e-23
15	7999233	8133434	NM_022170	EIF4H	0.810884	1.038047e-25	1.798625e-21	1.199083e-22
16	7999233	8132539	NM_014063	DBNL	0.810786	1.063265e-25	1.842319e-21	1.151450e-22
17	7999233	8146171	NM_001556	IKBKB	0.809204	1.563969e-25	2.709889e-21	1.594052e-22
18	7999233	8160914	NM_007126	VCP	0.808224	1.982303e-25	3.434736e-21	1.908187e-22
19	7999233	7899504	NM_006582	GMEB1	0.808192	1.997739e-25	3.461482e-21	1.821833e-22
20	7999233	7916493	NM_003713	PPAP2B	-0.806073	3.320133e-25	5.752794e-21	2.876397e-22
21	7999233	8066716	NM_133171	ELMO2	0.805549	3.761133e-25	6.516915e-21	3.103293e-22
22	7999233	8019046	NM_014740	EIF4A3	0.803385	6.267644e-25	1.085995e-20	4.936339e-22
23	7999233	7920515	NM_017582	UBE2Q1	0.803284	6.418231e-25	1.112087e-20	4.835160e-22
24	7999233	7921752	NM_001025598	ARHGAP30	0.802176	8.315610e-25	1.440846e-20	6.003524e-22
25	7999233	7975863	NM_017926	C14orf118	0.798032	2.158828e-24	3.740602e-20	1.496241e-21
26	7999233	8099340	NM_017491	WDR1	0.797948	2.200738e-24	3.813219e-20	1.466623e-21
27	7999233	8163784	NM_012164	FBXW2	0.795952	3.456507e-24	5.989090e-20	2.218181e-21
28	7999233	7911619	NM_002074	GNB1	0.795949	3.458292e-24	5.992183e-20	2.140065e-21
29	7999233	8116020	NM_006816	LMAN2	0.795171	4.118222e-24	7.135644e-20	2.460567e-21
30	7999233	7947784	NM_032389	ARFGAP2	0.794900	4.375936e-24	7.582184e-20	2.527395e-21
31	7999233	8138773	NM_022170	EIF4H	0.793221	6.359535e-24	1.101917e-19	3.554570e-21
32	7999233	8060225	NM_203346	HDLBP	0.792584	7.321352e-24	1.268571e-19	3.964283e-21
33	7999233	7941709	NM_002896	RBM4	0.792327	7.747809e-24	1.342463e-19	4.068069e-21
34	7999233	7990211	NM_000520	HEXA	0.789828	1.339202e-23	2.320436e-19	6.824811e-21
35	7999233	7952557	NM_003139	SRPR	0.789694	1.378903e-23	2.389225e-19	6.826358e-21
36	7999233	8025076	NM_005428	VAV1	0.789288	1.505990e-23	2.609429e-19	7.248413e-21
37	7999233	7973214	NM_014828	TOX4	0.787776	2.087341e-23	3.616736e-19	9.774962e-21
38	7999233	7982531	NM_006305	ANP32A	0.787136	2.394892e-23	4.149630e-19	1.092008e-20
39	7999233	7996725	NM_017803	DUS2L	0.786852	2.545338e-23	4.410308e-19	1.130848e-20
40	7999233	7915758	NM_021639	GPBP1L1	0.786457	2.769557e-23	4.798811e-19	1.199703e-20
41	7999233	8101324	NM_031370	HNRNPD	0.784571	4.134914e-23	7.164565e-19	1.747455e-20
42	7999233	8078738	NM_005109	OXSR1	0.784047	4.618356e-23	8.002225e-19	1.905292e-20
43	7999233	8018364	NM_002086	GRB2	0.783278	5.429691e-23	9.408026e-19	2.187913e-20
44	7999233	7987172	NM_020154	C15orf24	0.782625	6.226156e-23	1.078806e-18	2.451832e-20
45	7999233	7900119	NM_005119	THRAP3	0.781263	8.270365e-23	1.433006e-18	3.184458e-20
46	7999233	7940051	NM_015457	ZDHHC5	0.780189	1.033319e-22	1.790431e-18	3.892242e-20
47	7999233	7922637	NM_145034	TOR1AIP2	0.779177	1.272775e-22	2.205337e-18	4.692206e-20
48	7999233	7900382	NM_006367	CAP1	0.778175	1.562908e-22	2.708050e-18	5.641771e-20
49	7999233	8006850	NM_016507	CDK12	0.777897	1.654202e-22	2.866236e-18	5.849460e-20
50	7999233	8049180	NM_004846	EIF4E2	0.777474	1.803381e-22	3.124718e-18	6.249437e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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