[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
14388	7967841	NM_001161344	CHFR		checkpoint with forkhead and ring finger domains

Fetching correlation data, please wait...
Getting list of correlations for id 14388.
Getting list of p-values for id 14388.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.133 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7967841	7921752	NM_001025598	ARHGAP30	0.844005	1.254340e-29	2.173395e-25	2.173395e-25
2	7967841	7999233	NM_032569	GLYR1	0.813345	5.654696e-26	9.797892e-22	4.898946e-22
3	7967841	7956593	NM_006812	OS9	0.809862	1.332558e-25	2.308923e-21	7.696411e-22
4	7967841	7956443	NM_004990	MARS	0.806837	2.766586e-25	4.793663e-21	1.198416e-21
5	7967841	7915758	NM_021639	GPBP1L1	0.805621	3.696547e-25	6.405006e-21	1.281001e-21
6	7967841	8025076	NM_005428	VAV1	0.799100	1.692008e-24	2.931742e-20	4.886237e-21
7	7967841	8116020	NM_006816	LMAN2	0.797780	2.286332e-24	3.961528e-20	5.659326e-21
8	7967841	7963721	NM_020898	CALCOCO1	0.788062	1.962609e-23	3.400613e-19	4.250766e-20
9	7967841	8077550	NM_001077525	MTMR14	0.783211	5.506908e-23	9.541820e-19	1.060202e-19
10	7967841	7978208	NM_012461	TINF2	0.783196	5.524170e-23	9.571729e-19	9.571729e-20
11	7967841	7973660	NM_016576	GMPR2	0.782688	6.144213e-23	1.064608e-18	9.678252e-20
12	7967841	8018364	NM_002086	GRB2	0.776235	2.319290e-22	4.018634e-18	3.348862e-19
13	7967841	7996725	NM_017803	DUS2L	0.774016	3.625122e-22	6.281248e-18	4.831729e-19
14	7967841	7900382	NM_006367	CAP1	0.767916	1.205953e-21	2.089555e-17	1.492539e-18
15	7967841	8015955	NM_020218	ATXN7L3	0.767256	1.370390e-21	2.374475e-17	1.582984e-18
16	7967841	7963935	NM_032364	DNAJC14	0.765875	1.788232e-21	3.098469e-17	1.936543e-18
17	7967841	8004030	NM_015528	RNF167	0.763974	2.572110e-21	4.456695e-17	2.621585e-18
18	7967841	7928369	NM_004922	SEC24C	0.763653	2.734000e-21	4.737202e-17	2.631779e-18
19	7967841	7925851	NM_014023	WDR37	0.763200	2.978927e-21	5.161587e-17	2.716625e-18
20	7967841	8146171	NM_001556	IKBKB	0.762878	3.166642e-21	5.486840e-17	2.743420e-18
21	7967841	8093086	NM_005017	PCYT1A	0.762060	3.695254e-21	6.402766e-17	3.048936e-18
22	7967841	8132580	NM_006555	YKT6	0.761556	4.063642e-21	7.041072e-17	3.200487e-18
23	7967841	8089911	NM_005335	HCLS1	0.761258	4.297186e-21	7.445734e-17	3.237276e-18
24	7967841	8016980	hsa-mir-142		0.761120	4.410242e-21	7.641626e-17	3.184011e-18
25	7967841	8036710	NM_004877	GMFG	0.759108	6.421218e-21	1.112605e-16	4.450418e-18
26	7967841	8132539	NM_014063	DBNL	0.757719	8.303645e-21	1.438772e-16	5.533740e-18
27	7967841	8013191	NM_002018	FLII	0.757622	8.453913e-21	1.464810e-16	5.425220e-18
28	7967841	8009183	NM_203351	MAP3K3	0.756449	1.048925e-20	1.817472e-16	6.490972e-18
29	7967841	8082478	NM_016128	COPG	0.756286	1.080763e-20	1.872638e-16	6.457372e-18
30	7967841	7947894	NM_198700	CELF1	0.755631	1.218393e-20	2.111109e-16	7.037031e-18
31	7967841	8132646	NM_031443	CCM2	0.753839	1.687968e-20	2.924742e-16	9.434651e-18
32	7967841	8153819	NM_138496	CYHR1	0.753493	1.796952e-20	3.113578e-16	9.729932e-18
33	7967841	7994756	NM_002720	PPP4C	0.750928	2.849380e-20	4.937120e-16	1.496097e-17
34	7967841	8026638	NM_004145	MYO9B	0.749899	3.422824e-20	5.930728e-16	1.744332e-17
35	7967841	8019046	NM_014740	EIF4A3	0.749634	3.587915e-20	6.216780e-16	1.776223e-17
36	7967841	8117485	NM_078476	BTN2A1	0.749332	3.785837e-20	6.559720e-16	1.822145e-17
37	7967841	8039796	NM_014453	CHMP2A	0.746851	5.861765e-20	1.015668e-15	2.745049e-17
38	7967841	8146142	NM_178819	AGPAT6	0.746850	5.863199e-20	1.015916e-15	2.673464e-17
39	7967841	8030049	NM_017457	CYTH2	0.746106	6.678200e-20	1.157132e-15	2.967004e-17
40	7967841	8011542	NM_015113	ZZEF1	0.741873	1.388579e-19	2.405990e-15	6.014976e-17
41	7967841	8013696	NM_014680	KIAA0100	0.741719	1.425642e-19	2.470209e-15	6.024901e-17
42	7967841	8115783	NM_005990	STK10	0.740755	1.680733e-19	2.912205e-15	6.933822e-17
43	7967841	7978201	NM_006156	NEDD8	0.739779	1.984145e-19	3.437928e-15	7.995181e-17
44	7967841	7922669	NM_005819	STX6	0.739491	2.083537e-19	3.610145e-15	8.204875e-17
45	7967841	8040018	NM_016030	TTC15	0.739069	2.237795e-19	3.877428e-15	8.616506e-17
46	7967841	7906703	NM_004550	NDUFS2	0.737913	2.719418e-19	4.711935e-15	1.024334e-16
47	7967841	7997453	NM_002661	PLCG2	0.737805	2.769033e-19	4.797904e-15	1.020831e-16
48	7967841	8009932	NM_013260	SAP30BP	0.737499	2.914970e-19	5.050769e-15	1.052243e-16
49	7967841	7982531	NM_006305	ANP32A	0.737412	2.958218e-19	5.125705e-15	1.046062e-16
50	7967841	8117760	NM_001098479	HLA-F	0.737143	3.094678e-19	5.362148e-15	1.072430e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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