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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id Label1 AccNum GeneSym Info Gene Name
2499 8030064 NM_017457 CYTH2 link to infopage cytohesin 2
12777 8030049 NM_017457 CYTH2 link to infopage cytohesin 2

Fetching correlation data, please wait...
Getting list of correlations for id 2499.
Getting list of p-values for id 2499.
1 of 2 done.
Getting list of correlations for id 12777.
Getting list of p-values for id 12777.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.164 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8030049 8116020 NM_006816 LMAN2 link to infopage 0.806925 2.708643e-25 9.386531e-21 9.386531e-21
2 8030049 7970287 NM_005561 LAMP1 link to infopage 0.799359 1.594322e-24 5.524964e-20 2.762482e-20
3 8030049 8019463 NM_139062 CSNK1D link to infopage 0.797472 2.451810e-24 8.496503e-20 2.832168e-20
4 8030049 8028524 NM_004924 ACTN4 link to infopage 0.787315 2.304750e-23 7.986881e-19 1.996720e-19
5 8030049 7911619 NM_002074 GNB1 link to infopage 0.781412 8.019358e-23 2.779028e-18 5.558057e-19
6 8030049 8061966 NM_016732 RALY link to infopage 0.777273 1.878838e-22 6.510925e-18 1.085154e-18
7 8030049 8099340 NM_017491 WDR1 link to infopage 0.771501 5.977538e-22 2.071456e-17 2.959223e-18
8 8030049 8040927 NM_013392 NRBP1 link to infopage 0.771320 6.194047e-22 2.146485e-17 2.683106e-18
9 8030049 8117760 NM_001098479 HLA-F link to infopage 0.769301 9.208168e-22 3.190998e-17 3.545554e-18
10 8030049 8014189 NM_057178 RFFL link to infopage 0.767622 1.276760e-21 4.424484e-17 4.424484e-18
11 8030049 8019250 NM_000918 P4HB link to infopage 0.764021 2.548931e-21 8.833067e-17 8.030061e-18
12 8030049 8132539 NM_014063 DBNL link to infopage 0.761605 4.025928e-21 1.395145e-16 1.162621e-17
13 8030049 8179019 NM_018950 HLA-F link to infopage 0.760189 5.249611e-21 1.819200e-16 1.399385e-17
14 8030049 7948864 NM_003164 STX5 link to infopage 0.757838 8.123399e-21 2.815083e-16 2.010773e-17
15 8030049 8132592 NM_002541 OGDH link to infopage 0.756325 1.073147e-20 3.718883e-16 2.479255e-17
16 8030049 8177717 NM_018950 HLA-F link to infopage 0.750538 3.055103e-20 1.058715e-15 6.616971e-17
17 8030049 8025741 NM_001005360 DNM2 link to infopage 0.747898 4.876940e-20 1.690055e-15 9.941498e-17
18 8030049 7923659 NM_032833 PPP1R15B link to infopage 0.747539 5.194933e-20 1.800252e-15 1.000140e-16
19 8030049 7949496 NM_005507 CFL1 link to infopage 0.747053 5.658462e-20 1.960883e-15 1.032044e-16
20 8030049 7965480 NM_002629 PGAM1 link to infopage 0.747004 5.706872e-20 1.977659e-15 9.888297e-17
21 8030049 7999233 NM_032569 GLYR1 link to infopage 0.746364 6.384348e-20 2.212432e-15 1.053539e-16
22 8030049 7967841 NM_001161344 CHFR link to infopage 0.746106 6.678200e-20 2.314263e-15 1.051938e-16
23 8030049 8138773 NM_022170 EIF4H link to infopage 0.745851 6.981751e-20 2.419456e-15 1.051937e-16
24 8030049 8132580 NM_006555 YKT6 link to infopage 0.743597 1.032480e-19 3.577956e-15 1.490815e-16
25 8030049 8160914 NM_007126 VCP link to infopage 0.742333 1.283444e-19 4.447648e-15 1.779059e-16
26 8030049 8075728 NM_002473 MYH9 link to infopage 0.742099 1.335913e-19 4.629473e-15 1.780566e-16
27 8030049 7977803 NM_001077351 RBM23 link to infopage 0.742042 1.348955e-19 4.674669e-15 1.731359e-16
28 8030049 8011759 NM_005022 PFN1 link to infopage 0.741387 1.509088e-19 5.229594e-15 1.867712e-16
29 8030049 8045289 NM_012249 RHOQ link to infopage 0.740410 1.782405e-19 6.176745e-15 2.129912e-16
30 8030049 7964466 NM_006400 DCTN2 link to infopage 0.739105 2.224181e-19 7.707677e-15 2.569226e-16
31 8030049 7941478 NM_005146 SART1 link to infopage 0.738496 2.465017e-19 8.542269e-15 2.755571e-16
32 8030049 8086028 NM_000404 GLB1 link to infopage 0.736060 3.708907e-19 1.285285e-14 4.016515e-16
33 8030049 8004030 NM_015528 RNF167 link to infopage 0.735052 4.385881e-19 1.519883e-14 4.605706e-16
34 8030049 8072206 NM_005243 EWSR1 link to infopage 0.734900 4.497860e-19 1.558688e-14 4.584377e-16
35 8030049 7963721 NM_020898 CALCOCO1 link to infopage 0.734291 4.975630e-19 1.724255e-14 4.926443e-16
36 8030049 8125825 NM_006703 NUDT3 link to infopage 0.733936 5.276469e-19 1.828507e-14 5.079187e-16
37 8030049 7982531 NM_006305 ANP32A link to infopage 0.733576 5.599268e-19 1.940370e-14 5.244244e-16
38 8030049 8179525 NM_006979 SLC39A7 link to infopage 0.733344 5.817909e-19 2.016138e-14 5.305626e-16
39 8030049 8118613 NM_006979 SLC39A7 link to infopage 0.733344 5.817909e-19 2.016138e-14 5.169585e-16
40 8030049 8178225 NM_006979 SLC39A7 link to infopage 0.733344 5.817909e-19 2.016138e-14 5.040345e-16
41 8030049 7969372 ENST00000362412 link to infopage -0.733216 5.941205e-19 2.058865e-14 5.021622e-16
42 8030049 7956443 NM_004990 MARS link to infopage 0.733007 6.149653e-19 2.131101e-14 5.074049e-16
43 8030049 7941797 NM_001619 ADRBK1 link to infopage 0.732663 6.506633e-19 2.254808e-14 5.243741e-16
44 8030049 7900030 NM_012199 EIF2C1 link to infopage 0.732581 6.595725e-19 2.285683e-14 5.194733e-16
45 8030049 8034420 NM_000528 MAN2B1 link to infopage 0.732172 7.052418e-19 2.443945e-14 5.430989e-16
46 8030049 8017675 NR_024386 PLEKHM1P link to infopage 0.731860 7.422728e-19 2.572272e-14 5.591896e-16
47 8030049 8134552 NM_005720 ARPC1B link to infopage 0.731548 7.810637e-19 2.706698e-14 5.758932e-16
48 8030049 8007505 NM_004941 DHX8 link to infopage 0.730668 9.016951e-19 3.124734e-14 6.509863e-16
49 8030049 8170891 NM_001493 GDI1 link to infopage 0.730309 9.558106e-19 3.312266e-14 6.759726e-16
50 8030049 7898328 NM_001114600 C1orf144 link to infopage 0.729553 1.080618e-18 3.744774e-14 7.489548e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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