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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 16798.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
16798 8117760 NM_001098479 HLA-F link to infopage major histocompatibility complex, class I, F

Fetching correlation data, please wait...
Getting list of correlations for id 16798.
Getting list of p-values for id 16798.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.120 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8117760 8179019 NM_018950 HLA-F link to infopage 0.990575 9.371242e-91 1.623755e-86 1.623755e-86
2 8117760 8177717 NM_018950 HLA-F link to infopage 0.981079 2.858514e-75 4.952947e-71 2.476473e-71
3 8117760 8179103 NM_005516 HLA-E link to infopage 0.884136 8.099203e-36 1.403349e-31 4.677829e-32
4 8117760 8177788 NM_005516 HLA-E link to infopage 0.884136 8.099203e-36 1.403349e-31 3.508372e-32
5 8117760 8117890 NM_005516 HLA-E link to infopage 0.882915 1.345583e-35 2.331492e-31 4.662984e-32
6 8117760 8117800 NM_002116 HLA-A link to infopage 0.853312 6.767621e-31 1.172626e-26 1.954376e-27
7 8117760 8178489 link to infopage 0.846503 5.839624e-30 1.011832e-25 1.445474e-26
8 8117760 8124901 NM_002117 HLA-C link to infopage 0.838071 7.316679e-29 1.267761e-24 1.584701e-25
9 8117760 8116020 NM_006816 LMAN2 link to infopage 0.825526 2.434882e-27 4.218920e-23 4.687688e-24
10 8117760 8177732 NM_002116 HLA-A link to infopage 0.820216 9.876374e-27 1.711279e-22 1.711279e-23
11 8117760 8030007 NM_001425 EMP3 link to infopage 0.819857 1.083851e-26 1.877989e-22 1.707263e-23
12 8117760 7973564 NM_176783 PSME1 link to infopage 0.819600 1.158244e-26 2.006890e-22 1.672408e-23
13 8117760 8178498 NM_005514 HLA-B link to infopage 0.815894 2.984721e-26 5.171625e-22 3.978173e-23
14 8117760 8179731 link to infopage 0.807924 2.131040e-25 3.692453e-21 2.637467e-22
15 8117760 8134552 NM_005720 ARPC1B link to infopage 0.806405 3.067112e-25 5.314386e-21 3.542924e-22
16 8117760 7978208 NM_012461 TINF2 link to infopage 0.805711 3.618476e-25 6.269733e-21 3.918583e-22
17 8117760 8124911 NM_005514 HLA-B link to infopage 0.804887 4.399970e-25 7.623828e-21 4.484605e-22
18 8117760 8132539 NM_014063 DBNL link to infopage 0.801111 1.064766e-24 1.844920e-20 1.024956e-21
19 8117760 8016980 hsa-mir-142 link to infopage 0.790060 1.273221e-23 2.206111e-19 1.161111e-20
20 8117760 8138773 NM_022170 EIF4H link to infopage 0.789046 1.586816e-23 2.749477e-19 1.374738e-20
21 8117760 8009653 NM_007261 CD300A link to infopage 0.783351 5.346782e-23 9.264369e-19 4.411604e-20
22 8117760 7994756 NM_002720 PPP4C link to infopage 0.782628 6.222748e-23 1.078215e-18 4.900979e-20
23 8117760 8133434 NM_022170 EIF4H link to infopage 0.782428 6.487695e-23 1.124123e-18 4.887491e-20
24 8117760 8011759 NM_005022 PFN1 link to infopage 0.776730 2.098096e-22 3.635371e-18 1.514738e-19
25 8117760 8077550 NM_001077525 MTMR14 link to infopage 0.775432 2.727663e-22 4.726222e-18 1.890489e-19
26 8117760 7983512 NM_021199 SQRDL link to infopage 0.771833 5.597800e-22 9.699307e-18 3.730503e-19
27 8117760 8117777 NM_002127 HLA-G link to infopage 0.771791 5.643812e-22 9.779033e-18 3.621864e-19
28 8117760 8030049 NM_017457 CYTH2 link to infopage 0.769301 9.208168e-22 1.595499e-17 5.698211e-19
29 8117760 7958152 NM_002629 PGAM1 link to infopage 0.762865 3.174461e-21 5.500389e-17 1.896686e-18
30 8117760 8125483 NM_000544 TAP2 link to infopage 0.762487 3.409592e-21 5.907800e-17 1.969267e-18
31 8117760 7921752 NM_001025598 ARHGAP30 link to infopage 0.761021 4.492959e-21 7.784951e-17 2.511274e-18
32 8117760 7965480 NM_002629 PGAM1 link to infopage 0.760591 4.869995e-21 8.438241e-17 2.636950e-18
33 8117760 8125512 NM_000593 TAP1 link to infopage 0.760087 5.350335e-21 9.270525e-17 2.809250e-18
34 8117760 8178867 NM_000593 TAP1 link to infopage 0.760087 5.350335e-21 9.270525e-17 2.726625e-18
35 8117760 8180061 NM_000593 TAP1 link to infopage 0.760087 5.350335e-21 9.270525e-17 2.648721e-18
36 8117760 8037144 NM_133328 DEDD2 link to infopage 0.758484 7.208608e-21 1.249036e-16 3.469543e-18
37 8117760 7929624 NM_002629 PGAM1 link to infopage 0.758342 7.400759e-21 1.282330e-16 3.465756e-18
38 8117760 8178841 NM_018833 TAP2 link to infopage 0.757784 8.205539e-21 1.421774e-16 3.741510e-18
39 8117760 7911619 NM_002074 GNB1 link to infopage 0.757039 9.412057e-21 1.630827e-16 4.181608e-18
40 8117760 7921738 NM_007122 USF1 link to infopage 0.753978 1.646093e-20 2.852186e-16 7.130465e-18
41 8117760 7994659 NM_017458 MVP link to infopage 0.751773 2.449612e-20 4.244443e-16 1.035230e-17
42 8117760 8180034 NM_000544 TAP2 link to infopage 0.751577 2.537018e-20 4.395891e-16 1.046641e-17
43 8117760 8173729 NM_001029891 PGAM4 link to infopage 0.748928 4.066511e-20 7.046044e-16 1.638615e-17
44 8117760 8176282 NM_001029891 PGAM4 link to infopage 0.748928 4.066511e-20 7.046044e-16 1.601374e-17
45 8117760 8114010 NM_002198 IRF1 link to infopage 0.745765 7.087789e-20 1.228101e-15 2.729114e-17
46 8117760 7999233 NM_032569 GLYR1 link to infopage 0.743807 9.956058e-20 1.725086e-15 3.750187e-17
47 8117760 7956593 NM_006812 OS9 link to infopage 0.739786 1.981845e-19 3.433943e-15 7.306261e-17
48 8117760 8004030 NM_015528 RNF167 link to infopage 0.739782 1.983192e-19 3.436276e-15 7.158909e-17
49 8117760 8082478 NM_016128 COPG link to infopage 0.739238 2.174724e-19 3.768145e-15 7.690091e-17
50 8117760 8177725 NM_002127 HLA-G link to infopage 0.738655 2.399660e-19 4.157891e-15 8.315781e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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