[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 17297.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
17297	8124911	NM_005514	HLA-B		major histocompatibility complex, class I, B

Fetching correlation data, please wait...
Getting list of correlations for id 17297.
Getting list of p-values for id 17297.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.094 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8124911	8178498	NM_005514	HLA-B	0.995734	1.992504e-108	3.452412e-104	3.452412e-104
2	8124911	8179731			0.971683	2.349357e-66	4.070731e-62	2.035365e-62
3	8124911	8177732	NM_002116	HLA-A	0.945551	5.098436e-52	8.834061e-48	2.944687e-48
4	8124911	8124901	NM_002117	HLA-C	0.932870	1.777231e-47	3.079408e-43	7.698519e-44
5	8124911	8178489			0.929856	1.578819e-46	2.735619e-42	5.471238e-43
6	8124911	8117777	NM_002127	HLA-G	0.919589	1.377418e-43	2.386652e-39	3.977754e-40
7	8124911	8117800	NM_002116	HLA-A	0.911565	1.501530e-41	2.601702e-37	3.716717e-38
8	8124911	8117890	NM_005516	HLA-E	0.907295	1.524374e-40	2.641282e-36	3.301603e-37
9	8124911	8177788	NM_005516	HLA-E	0.906695	2.092762e-40	3.626129e-36	4.029032e-37
10	8124911	8179103	NM_005516	HLA-E	0.906695	2.092762e-40	3.626129e-36	3.626129e-37
11	8124911	8179041			0.871656	1.131728e-33	1.960946e-29	1.782678e-30
12	8124911	8179034	NM_002127	HLA-G	0.852414	9.048307e-31	1.567800e-26	1.306500e-27
13	8124911	8177725	NM_002127	HLA-G	0.852414	9.048307e-31	1.567800e-26	1.206000e-27
14	8124911	8179019	NM_018950	HLA-F	0.810416	1.164039e-25	2.016930e-21	1.440664e-22
15	8124911	8117813	NR_024240	HLA-J	0.807541	2.336673e-25	4.048753e-21	2.699168e-22
16	8124911	8177717	NM_018950	HLA-F	0.804921	4.364615e-25	7.562569e-21	4.726605e-22
17	8124911	8117760	NM_001098479	HLA-F	0.804887	4.399970e-25	7.623828e-21	4.484605e-22
18	8124911	7934196	NM_002778	PSAP	0.779767	1.127202e-22	1.953103e-18	1.085057e-19
19	8124911	7973564	NM_176783	PSME1	0.766495	1.587222e-21	2.750180e-17	1.447463e-18
20	8124911	7994769	NM_007074	CORO1A	0.765847	1.798101e-21	3.115569e-17	1.557784e-18
21	8124911	7994659	NM_017458	MVP	0.753729	1.721870e-20	2.983484e-16	1.420707e-17
22	8124911	8032410	NM_130807	MOBKL2A	0.752010	2.347749e-20	4.067945e-16	1.849066e-17
23	8124911	8042391	NM_002664	PLEK	0.742962	1.151764e-19	1.995661e-15	8.676786e-17
24	8124911	8009653	NM_007261	CD300A	0.741419	1.500701e-19	2.600264e-15	1.083443e-16
25	8124911	8036808	NM_018457	PRR13	0.741278	1.537335e-19	2.663740e-15	1.065496e-16
26	8124911	8030374	NM_004107	FCGRT	0.736083	3.694732e-19	6.401863e-15	2.462255e-16
27	8124911	8179049	NR_024240	HLA-J	0.736063	3.706823e-19	6.422812e-15	2.378819e-16
28	8124911	7955810	NM_018457	PRR13	0.732593	6.582385e-19	1.140530e-14	4.073321e-16
29	8124911	7956593	NM_006812	OS9	0.731363	8.050766e-19	1.394956e-14	4.810194e-16
30	8124911	7983512	NM_021199	SQRDL	0.730542	9.203161e-19	1.594632e-14	5.315439e-16
31	8124911	7994756	NM_002720	PPP4C	0.729752	1.046330e-18	1.812976e-14	5.848310e-16
32	8124911	8063509	NM_016407	C20orf43	0.728896	1.201861e-18	2.082465e-14	6.507703e-16
33	8124911	8061668	NM_002110	HCK	0.727611	1.478016e-18	2.560959e-14	7.760481e-16
34	8124911	7921873	NM_000569	FCGR3A	0.727230	1.571143e-18	2.722320e-14	8.006824e-16
35	8124911	8132539	NM_014063	DBNL	0.726840	1.672405e-18	2.897776e-14	8.279360e-16
36	8124911	8009502	NM_000891	KCNJ2	0.723278	2.944596e-18	5.102101e-14	1.417250e-15
37	8124911	8018364	NM_002086	GRB2	0.721912	3.649157e-18	6.322895e-14	1.708890e-15
38	8124911	7911600	NM_023018	NADK	0.720420	4.606746e-18	7.982109e-14	2.100555e-15
39	8124911	7958828	NM_001143906	TRAFD1	0.719398	5.398288e-18	9.353614e-14	2.398362e-15
40	8124911	8133442	NM_032464	LAT2	0.718806	5.916481e-18	1.025149e-13	2.562872e-15
41	8124911	7905028	CR541728	LSP1	0.718220	6.476232e-18	1.122137e-13	2.736919e-15
42	8124911	7921738	NM_007122	USF1	0.716667	8.221577e-18	1.424553e-13	3.391792e-15
43	8124911	8179322	NM_005345	HSPA1A	0.716601	8.305459e-18	1.439087e-13	3.346714e-15
44	8124911	8039796	NM_014453	CHMP2A	0.715074	1.048438e-17	1.816628e-13	4.128700e-15
45	8124911	8136388	NM_018295	TMEM140	0.714973	1.064583e-17	1.844603e-13	4.099117e-15
46	8124911	8082431	NM_004637	RAB7A	0.714131	1.209751e-17	2.096135e-13	4.556815e-15
47	8124911	8089911	NM_005335	HCLS1	0.712058	1.653600e-17	2.865192e-13	6.096153e-15
48	8124911	8033987	NM_002162	ICAM3	0.711641	1.760359e-17	3.050175e-13	6.354530e-15
49	8124911	8134552	NM_005720	ARPC1B	0.710839	1.984869e-17	3.439182e-13	7.018739e-15
50	8124911	8103911	NM_002199	IRF2	0.708859	2.664488e-17	4.616758e-13	9.233516e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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