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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 16540.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16540	7905028	CR541728	LSP1		lymphocyte-specific protein 1

Fetching correlation data, please wait...
Getting list of correlations for id 16540.
Getting list of p-values for id 16540.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.111 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7905028	7937735	NM_002339	LSP1	0.872849	7.221611e-34	1.251288e-29	1.251288e-29
2	7905028	8079950	NM_002070	GNAI2	0.860560	6.038109e-32	1.046223e-27	5.231116e-28
3	7905028	7968126	NM_002339	LSP1	0.853263	6.876897e-31	1.191560e-26	3.971866e-27
4	7905028	8080487	NM_006254	PRKCD	0.848172	3.477481e-30	6.025431e-26	1.506358e-26
5	7905028	7905789	NM_000565	IL6R	0.834364	2.124796e-28	3.681633e-24	7.363267e-25
6	7905028	8006820	NM_006148	LASP1	0.831691	4.509078e-28	7.812880e-24	1.302147e-24
7	7905028	8026638	NM_004145	MYO9B	0.830827	5.734927e-28	9.936908e-24	1.419558e-24
8	7905028	7934185	NM_022153	C10orf54	0.824943	2.846109e-27	4.931453e-23	6.164316e-24
9	7905028	7997427	NM_198390	CMIP	0.823829	3.828240e-27	6.633192e-23	7.370214e-24
10	7905028	8009183	NM_203351	MAP3K3	0.823124	4.614116e-27	7.994878e-23	7.994878e-24
11	7905028	7914904	NM_032017	STK40	0.820711	8.684588e-27	1.504778e-22	1.367980e-23
12	7905028	7934733	NM_145869	ANXA11	0.812677	6.673613e-26	1.156337e-21	9.636141e-23
13	7905028	7953569	NM_080549	PTPN6	0.812434	7.087300e-26	1.228016e-21	9.446280e-23
14	7905028	8034762	NM_002730	PRKACA	0.811717	8.459932e-26	1.465852e-21	1.047037e-22
15	7905028	7950197	NM_015242	ARAP1	0.808532	1.840114e-25	3.188366e-21	2.125577e-22
16	7905028	8115783	NM_005990	STK10	0.802863	7.082809e-25	1.227238e-20	7.670239e-22
17	7905028	7996976	NM_007014	WWP2	0.802251	8.171587e-25	1.415891e-20	8.328770e-22
18	7905028	8011093	NM_152346	SLC43A2	0.800766	1.153355e-24	1.998419e-20	1.110233e-21
19	7905028	8088106	NM_001135055	TKT	0.797521	2.424739e-24	4.201345e-20	2.211234e-21
20	7905028	8066848	NM_020820	PREX1	0.797014	2.719950e-24	4.712857e-20	2.356429e-21
21	7905028	8019463	NM_139062	CSNK1D	0.795597	3.743380e-24	6.486154e-20	3.088645e-21
22	7905028	8032410	NM_130807	MOBKL2A	0.791842	8.622049e-24	1.493942e-19	6.790648e-21
23	7905028	7949264	NM_006795	EHD1	0.789341	1.488681e-23	2.579438e-19	1.121495e-20
24	7905028	8013191	NM_002018	FLII	0.785795	3.189282e-23	5.526068e-19	2.302528e-20
25	7905028	8018966	NM_003255	TIMP2	0.783868	4.796093e-23	8.310190e-19	3.324076e-20
26	7905028	8161056	NM_006289	TLN1	0.782217	6.780437e-23	1.174846e-18	4.518639e-20
27	7905028	7998940	NM_000243	MEFV	0.780493	9.702406e-23	1.681136e-18	6.226429e-20
28	7905028	8074349	NM_005137	DGCR2	0.780159	1.039733e-22	1.801546e-18	6.434093e-20
29	7905028	8132539	NM_014063	DBNL	0.779716	1.139125e-22	1.973762e-18	6.806075e-20
30	7905028	7914112	NM_005248	FGR	0.777881	1.659798e-22	2.875932e-18	9.586439e-20
31	7905028	7897482	NM_005026	PIK3CD	0.774811	3.091088e-22	5.355928e-18	1.727719e-19
32	7905028	8061668	NM_002110	HCK	0.774800	3.097860e-22	5.367662e-18	1.677394e-19
33	7905028	8156373	NM_001083536	FGD3	0.774115	3.553559e-22	6.157252e-18	1.865834e-19
34	7905028	8033605	NM_012335	MYO1F	0.773921	3.694817e-22	6.402010e-18	1.882944e-19
35	7905028	8170891	NM_001493	GDI1	0.773400	4.099530e-22	7.103255e-18	2.029501e-19
36	7905028	7964203	NM_013449	BAZ2A	0.773128	4.327792e-22	7.498764e-18	2.082990e-19
37	7905028	7970287	NM_005561	LAMP1	0.772090	5.319821e-22	9.217653e-18	2.491258e-19
38	7905028	8027074	NM_002911	UPF1	0.771202	6.340225e-22	1.098571e-17	2.890976e-19
39	7905028	7956593	NM_006812	OS9	0.769720	8.483646e-22	1.469961e-17	3.769132e-19
40	7905028	8025076	NM_005428	VAV1	0.769551	8.769524e-22	1.519495e-17	3.798738e-19
41	7905028	8018982	NM_138793	CANT1	0.768810	1.013501e-21	1.756093e-17	4.283155e-19
42	7905028	7975361	NM_014734	KIAA0247	0.768741	1.027207e-21	1.779842e-17	4.237719e-19
43	7905028	7963721	NM_020898	CALCOCO1	0.767636	1.273110e-21	2.205917e-17	5.130040e-19
44	7905028	8134814	NM_013439	PILRA	0.767114	1.408600e-21	2.440682e-17	5.547004e-19
45	7905028	7899192	NM_002953	RPS6KA1	0.767029	1.431894e-21	2.481042e-17	5.513426e-19
46	7905028	7947681	NM_004308	ARHGAP1	0.766894	1.469602e-21	2.546380e-17	5.535609e-19
47	7905028	7997453	NM_002661	PLCG2	0.766622	1.548901e-21	2.683781e-17	5.710173e-19
48	7905028	7941797	NM_001619	ADRBK1	0.766513	1.581702e-21	2.740615e-17	5.709614e-19
49	7905028	8082478	NM_016128	COPG	0.765587	1.890077e-21	3.274937e-17	6.683545e-19
50	7905028	8018364	NM_002086	GRB2	0.764030	2.544524e-21	4.408896e-17	8.817793e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
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