[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
15072	8034762	NM_002730	PRKACA		protein kinase, cAMP-dependent, catalytic, alpha

Fetching correlation data, please wait...
Getting list of correlations for id 15072.
Getting list of p-values for id 15072.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.119 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8034762	8079950	NM_002070	GNAI2	0.887512	1.929438e-36	3.343137e-32	3.343137e-32
2	8034762	8080487	NM_006254	PRKCD	0.860724	5.706521e-32	9.887689e-28	4.943844e-28
3	8034762	8026638	NM_004145	MYO9B	0.840838	3.243803e-29	5.620538e-25	1.873513e-25
4	8034762	8009183	NM_203351	MAP3K3	0.834317	2.153481e-28	3.731337e-24	9.328343e-25
5	8034762	7953569	NM_080549	PTPN6	0.832483	3.613044e-28	6.260322e-24	1.252064e-24
6	8034762	7934733	NM_145869	ANXA11	0.825874	2.217293e-27	3.841904e-23	6.403173e-24
7	8034762	7930139	NM_030912	TRIM8	0.823825	3.832682e-27	6.640888e-23	9.486983e-24
8	8034762	8018966	NM_003255	TIMP2	0.821114	7.818812e-27	1.354766e-22	1.693457e-23
9	8034762	8013191	NM_002018	FLII	0.818914	1.382222e-26	2.394976e-22	2.661085e-23
10	8034762	8024111	NM_004368	CNN2	0.813045	6.092359e-26	1.055623e-21	1.055623e-22
11	8034762	7905028	CR541728	LSP1	0.811717	8.459932e-26	1.465852e-21	1.332593e-22
12	8034762	8115783	NM_005990	STK10	0.803755	5.746465e-25	9.956900e-21	8.297417e-22
13	8034762	7950197	NM_015242	ARAP1	0.797883	2.233314e-24	3.869663e-20	2.976664e-21
14	8034762	7949264	NM_006795	EHD1	0.789928	1.310423e-23	2.270569e-19	1.621835e-20
15	8034762	8006820	NM_006148	LASP1	0.787930	2.019588e-23	3.499340e-19	2.332893e-20
16	8034762	7905789	NM_000565	IL6R	0.787031	2.449564e-23	4.244359e-19	2.652724e-20
17	8034762	7964203	NM_013449	BAZ2A	0.786644	2.661211e-23	4.611080e-19	2.712400e-20
18	8034762	7964579	NM_005730	CTDSP2	0.786234	2.904150e-23	5.032020e-19	2.795567e-20
19	8034762	7997427	NM_198390	CMIP	0.784227	4.446134e-23	7.703817e-19	4.054641e-20
20	8034762	7977003	NM_015156	RCOR1	0.781428	7.992423e-23	1.384847e-18	6.924235e-20
21	8034762	8125360	NM_002586	PBX2	0.780490	9.709035e-23	1.682285e-18	8.010879e-20
22	8034762	7914904	NM_032017	STK40	0.779115	1.289159e-22	2.233725e-18	1.015330e-19
23	8034762	7970287	NM_005561	LAMP1	0.778429	1.483818e-22	2.571012e-18	1.117831e-19
24	8034762	7996976	NM_007014	WWP2	0.777018	1.978888e-22	3.428819e-18	1.428675e-19
25	8034762	8088106	NM_001135055	TKT	0.776840	2.051745e-22	3.555058e-18	1.422023e-19
26	8034762	8019463	NM_139062	CSNK1D	0.774195	3.497100e-22	6.059425e-18	2.330548e-19
27	8034762	8025076	NM_005428	VAV1	0.771869	5.557712e-22	9.629848e-18	3.566610e-19
28	8034762	8085412	NM_001134382	IQSEC1	0.771138	6.420772e-22	1.112527e-17	3.973311e-19
29	8034762	8135114	NM_181552	CUX1	0.770308	7.561015e-22	1.310097e-17	4.517576e-19
30	8034762	7940798	NM_017490	MARK2	0.769890	8.206653e-22	1.421967e-17	4.739889e-19
31	8034762	7999044	NM_004380	CREBBP	0.769868	8.241731e-22	1.428045e-17	4.606596e-19
32	8034762	7960518	NM_001065	TNFRSF1A	0.769031	9.706505e-22	1.681846e-17	5.255769e-19
33	8034762	7956593	NM_006812	OS9	0.766793	1.498638e-21	2.596691e-17	7.868759e-19
34	8034762	7941797	NM_001619	ADRBK1	0.762905	3.150700e-21	5.459219e-17	1.605653e-18
35	8034762	7995096	NM_001145808	ITGAM	0.761798	3.882239e-21	6.726755e-17	1.921930e-18
36	8034762	8066848	NM_020820	PREX1	0.761153	4.382939e-21	7.594318e-17	2.109533e-18
37	8034762	7920877	NM_004723	ARHGEF2	0.760867	4.624424e-21	8.012740e-17	2.165605e-18
38	8034762	8165911	NM_005647	TBL1X	0.760185	5.253543e-21	9.102815e-17	2.395478e-18
39	8034762	8161056	NM_006289	TLN1	0.759688	5.763683e-21	9.986733e-17	2.560701e-18
40	8034762	7934477	NM_172171	CAMK2G	0.758926	6.641677e-21	1.150803e-16	2.877008e-18
41	8034762	7967002	NM_001080855	PXN	0.757789	8.197294e-21	1.420345e-16	3.464257e-18
42	8034762	8018364	NM_002086	GRB2	0.757036	9.416704e-21	1.631632e-16	3.884839e-18
43	8034762	8167334	NM_000377	WAS	0.756331	1.071908e-20	1.857295e-16	4.319291e-18
44	8034762	8136918	NM_003461	ZYX	0.755455	1.258106e-20	2.179920e-16	4.954363e-18
45	8034762	7966929	NM_006861	RAB35	0.755267	1.302054e-20	2.256069e-16	5.013486e-18
46	8034762	7934185	NM_022153	C10orf54	0.754761	1.427831e-20	2.474002e-16	5.378266e-18
47	8034762	7962951	NM_003482	MLL2	0.752904	1.998716e-20	3.463176e-16	7.368460e-18
48	8034762	8061668	NM_002110	HCK	0.752039	2.335490e-20	4.046703e-16	8.430631e-18
49	8034762	8003180	NM_001145548	ZDHHC7	0.750470	3.092275e-20	5.357985e-16	1.093466e-17
50	8034762	7941537	NM_018026	PACS1	0.748804	4.156307e-20	7.201633e-16	1.440327e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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