[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 16471.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16471	8080487	NM_006254	PRKCD		protein kinase C, delta

Fetching correlation data, please wait...
Getting list of correlations for id 16471.
Getting list of p-values for id 16471.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.086 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8080487	8009183	NM_203351	MAP3K3	0.883527	1.043935e-35	1.808827e-31	1.808827e-31
2	8080487	8079950	NM_002070	GNAI2	0.881498	2.409357e-35	4.174692e-31	2.087346e-31
3	8080487	8026638	NM_004145	MYO9B	0.876868	1.535570e-34	2.660683e-30	8.868942e-31
4	8080487	7905789	NM_000565	IL6R	0.871559	1.173865e-33	2.033956e-29	5.084891e-30
5	8080487	8018966	NM_003255	TIMP2	0.871023	1.434313e-33	2.485235e-29	4.970470e-30
6	8080487	8034762	NM_002730	PRKACA	0.860724	5.706521e-32	9.887689e-28	1.647948e-28
7	8080487	7927215	NM_000698	ALOX5	0.858492	1.219791e-31	2.113531e-27	3.019330e-28
8	8080487	7956593	NM_006812	OS9	0.856818	2.137749e-31	3.704077e-27	4.630096e-28
9	8080487	7998940	NM_000243	MEFV	0.851473	1.224408e-30	2.121532e-26	2.357258e-27
10	8080487	7905028	CR541728	LSP1	0.848172	3.477481e-30	6.025431e-26	6.025431e-27
11	8080487	7953569	NM_080549	PTPN6	0.847747	3.969953e-30	6.878738e-26	6.253398e-27
12	8080487	8066848	NM_020820	PREX1	0.846062	6.690651e-30	1.159289e-25	9.660742e-27
13	8080487	8039196	NM_001081450	LILRB3	0.845690	7.500482e-30	1.299608e-25	9.996988e-27
14	8080487	7995096	NM_001145808	ITGAM	0.845634	7.629469e-30	1.321958e-25	9.442557e-27
15	8080487	7950197	NM_015242	ARAP1	0.845438	8.104086e-30	1.404195e-25	9.361300e-27
16	8080487	7996976	NM_007014	WWP2	0.843418	1.498469e-29	2.596397e-25	1.622748e-26
17	8080487	7977003	NM_015156	RCOR1	0.837094	9.714580e-29	1.683245e-24	9.901443e-26
18	8080487	7914904	NM_032017	STK40	0.834627	1.971911e-28	3.416731e-24	1.898184e-25
19	8080487	8103911	NM_002199	IRF2	0.831512	4.740487e-28	8.213843e-24	4.323075e-25
20	8080487	7997427	NM_198390	CMIP	0.831062	5.371750e-28	9.307631e-24	4.653815e-25
21	8080487	8032410	NM_130807	MOBKL2A	0.829651	7.936652e-28	1.375184e-23	6.548494e-25
22	8080487	8030782	NM_014441	SIGLEC9	0.829465	8.353627e-28	1.447433e-23	6.579241e-25
23	8080487	7964203	NM_013449	BAZ2A	0.829000	9.492201e-28	1.644714e-23	7.150929e-25
24	8080487	8061668	NM_002110	HCK	0.828634	1.049320e-27	1.818158e-23	7.575657e-25
25	8080487	7934733	NM_145869	ANXA11	0.828343	1.136149e-27	1.968606e-23	7.874423e-25
26	8080487	7997453	NM_002661	PLCG2	0.828341	1.136818e-27	1.969764e-23	7.576016e-25
27	8080487	7960518	NM_001065	TNFRSF1A	0.826909	1.677718e-27	2.906982e-23	1.076660e-24
28	8080487	7970162	NM_015205	ATP11A	0.826785	1.734914e-27	3.006085e-23	1.073602e-24
29	8080487	8088106	NM_001135055	TKT	0.825597	2.388999e-27	4.139418e-23	1.427386e-24
30	8080487	7993035	NM_016936	UBN1	0.825196	2.659859e-27	4.608738e-23	1.536246e-24
31	8080487	7975361	NM_014734	KIAA0247	0.825183	2.668796e-27	4.624224e-23	1.491685e-24
32	8080487	7934185	NM_022153	C10orf54	0.824885	2.889926e-27	5.007375e-23	1.564805e-24
33	8080487	8015607	NM_139276	STAT3	0.824245	3.428155e-27	5.939964e-23	1.799989e-24
34	8080487	8006820	NM_006148	LASP1	0.822556	5.358359e-27	9.284428e-23	2.730714e-24
35	8080487	8018364	NM_002086	GRB2	0.822216	5.860501e-27	1.015449e-22	2.901283e-24
36	8080487	7999044	NM_004380	CREBBP	0.820527	9.108929e-27	1.578304e-22	4.384178e-24
37	8080487	8025076	NM_005428	VAV1	0.820360	9.513585e-27	1.648419e-22	4.455186e-24
38	8080487	7950578	NM_001128620	PAK1	0.818016	1.740679e-26	3.016074e-22	7.937038e-24
39	8080487	7974533	NM_021255	PELI2	0.817563	1.954066e-26	3.385810e-22	8.681564e-24
40	8080487	8072279	NM_153050	MTMR3	0.813030	6.114240e-26	1.059414e-21	2.648536e-23
41	8080487	8072744	NM_013416	NCF4	0.811117	9.805695e-26	1.699033e-21	4.143982e-23
42	8080487	8064191	NM_199360	TPD52L2	0.809210	1.561698e-25	2.705955e-21	6.442750e-23
43	8080487	8033605	NM_012335	MYO1F	0.809196	1.566712e-25	2.714641e-21	6.313119e-23
44	8080487	8134814	NM_013439	PILRA	0.806777	2.806062e-25	4.862063e-21	1.105014e-22
45	8080487	7940191	NM_004177	STX3	0.805595	3.719953e-25	6.445563e-21	1.432347e-22
46	8080487	7911600	NM_023018	NADK	0.805228	4.058472e-25	7.032114e-21	1.528720e-22
47	8080487	8016847	NM_005082	TRIM25	0.804518	4.800202e-25	8.317309e-21	1.769640e-22
48	8080487	8082431	NM_004637	RAB7A	0.804143	5.244883e-25	9.087809e-21	1.893294e-22
49	8080487	8036503	NM_170604	RASGRP4	0.803612	5.942627e-25	1.029679e-20	2.101386e-22
50	8080487	8042637	NM_001130978	DYSF	0.803431	6.200948e-25	1.074438e-20	2.148876e-22

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation