[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
15351	7983512	NM_021199	SQRDL		sulfide quinone reductase-like (yeast)

Fetching correlation data, please wait...
Getting list of correlations for id 15351.
Getting list of p-values for id 15351.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.183 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7983512	8039796	NM_014453	CHMP2A	0.868683	3.403374e-33	5.897026e-29	5.897026e-29
2	7983512	7973564	NM_176783	PSME1	0.861396	4.529199e-32	7.847743e-28	3.923871e-28
3	7983512	8018364	NM_002086	GRB2	0.861009	5.174496e-32	8.965850e-28	2.988617e-28
4	7983512	7963911	NM_001780	CD63	0.842073	2.245064e-29	3.890022e-25	9.725055e-26
5	7983512	7951397	NM_033292	CASP1	0.841845	2.403781e-29	4.165032e-25	8.330064e-26
6	7983512	8006812	NM_002795	PSMB3	0.834082	2.301432e-28	3.987690e-24	6.646151e-25
7	7983512	8119000	NM_001315	MAPK14	0.831485	4.776422e-28	8.276106e-24	1.182301e-24
8	7983512	7900922	NM_004047	ATP6V0B	0.831069	5.361363e-28	9.289634e-24	1.161204e-24
9	7983512	8171802	NM_001037171	ACOT9	0.830629	6.057959e-28	1.049663e-23	1.166292e-24
10	7983512	8018305	NM_016185	HN1	0.829114	9.200978e-28	1.594253e-23	1.594253e-24
11	7983512	8048752	NM_022915	MRPL44	0.828549	1.074049e-27	1.861004e-23	1.691822e-24
12	7983512	7973660	NM_016576	GMPR2	0.826853	1.703258e-27	2.951236e-23	2.459363e-24
13	7983512	8036808	NM_018457	PRR13	0.824549	3.160888e-27	5.476871e-23	4.212978e-24
14	7983512	7938880	NM_001098520	HTATIP2	0.820280	9.713784e-27	1.683107e-22	1.202219e-23
15	7983512	8030374	NM_004107	FCGRT	0.814483	4.256407e-26	7.375076e-22	4.916717e-23
16	7983512	8063369	NM_018683	RNF114	0.811092	9.865993e-26	1.709481e-21	1.068425e-22
17	7983512	7955810	NM_018457	PRR13	0.809707	1.383861e-25	2.397816e-21	1.410480e-22
18	7983512	8089911	NM_005335	HCLS1	0.807269	2.494043e-25	4.321428e-21	2.400793e-22
19	7983512	8155192	NM_022343	GLIPR2	0.806827	2.772812e-25	4.804451e-21	2.528658e-22
20	7983512	7937465	NM_006755	TALDO1	0.805860	3.493009e-25	6.052336e-21	3.026168e-22
21	7983512	7917532	NM_004120	GBP2	0.803968	5.465227e-25	9.469599e-21	4.509333e-22
22	7983512	8025076	NM_005428	VAV1	0.802010	8.643381e-25	1.497639e-20	6.807448e-22
23	7983512	8042391	NM_002664	PLEK	0.801959	8.746044e-25	1.515427e-20	6.588813e-22
24	7983512	8063509	NM_016407	C20orf43	0.801719	9.248155e-25	1.602428e-20	6.676782e-22
25	7983512	7956593	NM_006812	OS9	0.798608	1.893178e-24	3.280309e-20	1.312124e-21
26	7983512	8009653	NM_007261	CD300A	0.794399	4.893779e-24	8.479450e-20	3.261327e-21
27	7983512	8168500	NM_000291	PGK1	0.794208	5.106912e-24	8.848747e-20	3.277314e-21
28	7983512	7978201	NM_006156	NEDD8	0.792943	6.762656e-24	1.171765e-19	4.184877e-21
29	7983512	8035304	NM_004335	BST2	0.792426	7.580772e-24	1.313520e-19	4.529380e-21
30	7983512	8089527	NM_022488	ATG3	0.792386	7.648208e-24	1.325205e-19	4.417350e-21
31	7983512	7994756	NM_002720	PPP4C	0.792383	7.653436e-24	1.326111e-19	4.277777e-21
32	7983512	8103911	NM_002199	IRF2	0.788264	1.879094e-23	3.255906e-19	1.017471e-20
33	7983512	7987172	NM_020154	C15orf24	0.787764	2.092900e-23	3.626368e-19	1.098899e-20
34	7983512	8036710	NM_004877	GMFG	0.787738	2.104765e-23	3.646927e-19	1.072626e-20
35	7983512	7900382	NM_006367	CAP1	0.787671	2.135132e-23	3.699544e-19	1.057012e-20
36	7983512	7958828	NM_001143906	TRAFD1	0.787026	2.452156e-23	4.248850e-19	1.180236e-20
37	7983512	8048234	NM_152862	ARPC2	0.786888	2.525466e-23	4.375875e-19	1.182669e-20
38	7983512	8163185	NM_003329	TXN	0.786585	2.694764e-23	4.669218e-19	1.228742e-20
39	7983512	8009502	NM_000891	KCNJ2	0.786260	2.888560e-23	5.005009e-19	1.283336e-20
40	7983512	8116020	NM_006816	LMAN2	0.785390	3.475704e-23	6.022352e-19	1.505588e-20
41	7983512	8134552	NM_005720	ARPC1B	0.784007	4.657439e-23	8.069945e-19	1.968279e-20
42	7983512	8179827	NM_001288	CLIC1	0.783669	5.000712e-23	8.664734e-19	2.063032e-20
43	7983512	8114010	NM_002198	IRF1	0.783513	5.168019e-23	8.954626e-19	2.082471e-20
44	7983512	8093086	NM_005017	PCYT1A	0.782010	7.079141e-23	1.226603e-18	2.787733e-20
45	7983512	8049180	NM_004846	EIF4E2	0.782006	7.086131e-23	1.227814e-18	2.728475e-20
46	7983512	8174474	NM_022977	ACSL4	0.781926	7.204983e-23	1.248407e-18	2.713929e-20
47	7983512	8162276	NM_005384	NFIL3	0.781908	7.232122e-23	1.253110e-18	2.666191e-20
48	7983512	7917472	NM_001514	GTF2B	0.780628	9.435056e-23	1.634812e-18	3.405859e-20
49	7983512	8080923	NM_002802	PSMC1	0.780266	1.016912e-22	1.762004e-18	3.595927e-20
50	7983512	7905047	NM_000566	FCGR1A	0.780185	1.034156e-22	1.791882e-18	3.583764e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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