[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 14985.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
14985	7978201	NM_006156	NEDD8		neural precursor cell expressed, developmentally down-regulated 8

Fetching correlation data, please wait...
Getting list of correlations for id 14985.
Getting list of p-values for id 14985.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.660 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7978201	8028514	NM_013234	EIF3K	0.861718	4.052136e-32	7.021136e-28	7.021136e-28
2	7978201	7906662	NM_016406	UFC1	0.847958	3.717447e-30	6.441221e-26	3.220610e-26
3	7978201	8164067	NM_002799	PSMB7	0.846527	5.796383e-30	1.004339e-25	3.347797e-26
4	7978201	7960553	NM_016497	MRPL51	0.846044	6.726502e-30	1.165501e-25	2.913753e-26
5	7978201	7897404	NM_007262	PARK7	0.844948	9.414491e-30	1.631249e-25	3.262498e-26
6	7978201	8139706	NM_014302	SEC61G	0.842674	1.874726e-29	3.248338e-25	5.413896e-26
7	7978201	7963911	NM_001780	CD63	0.842661	1.882293e-29	3.261449e-25	4.659213e-26
8	7978201	8009227	NM_002805	PSMC5	0.834208	2.220737e-28	3.847870e-24	4.809838e-25
9	7978201	8134552	NM_005720	ARPC1B	0.833678	2.580864e-28	4.471863e-24	4.968736e-25
10	7978201	8019046	NM_014740	EIF4A3	0.832356	3.744155e-28	6.487497e-24	6.487497e-25
11	7978201	8123148	NM_014161	MRPL18	0.832340	3.760683e-28	6.516135e-24	5.923759e-25
12	7978201	7959597	NM_006815	TMED2	0.832225	3.884073e-28	6.729933e-24	5.608277e-25
13	7978201	7989619	NM_000942	PPIB	0.830247	6.734625e-28	1.166908e-23	8.976219e-25
14	7978201	7940688	NM_002696	POLR2G	0.828577	1.065610e-27	1.846382e-23	1.318844e-24
15	7978201	8116020	NM_006816	LMAN2	0.828031	1.237103e-27	2.143529e-23	1.429019e-24
16	7978201	8080923	NM_002802	PSMC1	0.826750	1.751459e-27	3.034754e-23	1.896721e-24
17	7978201	7977657	NM_031314	HNRNPC	0.825971	2.160619e-27	3.743704e-23	2.202179e-24
18	7978201	7950644	NM_004549	NDUFC2	0.825882	2.212814e-27	3.834143e-23	2.130080e-24
19	7978201	7959282	NM_194271	RNF34	0.825091	2.735137e-27	4.739172e-23	2.494301e-24
20	7978201	8146216	NM_001135694	VDAC3	0.824957	2.835413e-27	4.912920e-23	2.456460e-24
21	7978201	7928752	NM_014394	GHITM	0.824676	3.056175e-27	5.295434e-23	2.521635e-24
22	7978201	7987172	NM_020154	C15orf24	0.824417	3.274096e-27	5.673026e-23	2.578648e-24
23	7978201	7976189	NM_002802	PSMC1	0.823928	3.728522e-27	6.460409e-23	2.808874e-24
24	7978201	8169659	NM_004541	NDUFA1	0.822199	5.886031e-27	1.019873e-22	4.249469e-24
25	7978201	7916372	NM_004872	TMEM59	0.819968	1.053093e-26	1.824693e-22	7.298774e-24
26	7978201	7918345	NM_002790	PSMA5	0.819524	1.181371e-26	2.046962e-22	7.872930e-24
27	7978201	8064502	NM_003091	SNRPB	0.818034	1.732723e-26	3.002288e-22	1.111959e-23
28	7978201	7978208	NM_012461	TINF2	0.814829	3.902979e-26	6.762692e-22	2.415247e-23
29	7978201	7906703	NM_004550	NDUFS2	0.813241	5.802150e-26	1.005338e-21	3.466684e-23
30	7978201	7937287	NM_002817	PSMD13	0.810972	1.016060e-25	1.760527e-21	5.868425e-23
31	7978201	7899737	NM_003757	EIF3I	0.809817	1.347334e-25	2.334526e-21	7.530729e-23
32	7978201	8130952	NM_002793	PSMB1	0.809419	1.484222e-25	2.571711e-21	8.036598e-23
33	7978201	7958152	NM_002629	PGAM1	0.809224	1.556089e-25	2.696236e-21	8.170412e-23
34	7978201	8042720	NM_006429	CCT7	0.805619	3.698858e-25	6.409012e-21	1.885003e-22
35	7978201	8049180	NM_004846	EIF4E2	0.805617	3.700439e-25	6.411750e-21	1.831929e-22
36	7978201	8015712	NM_001040431	CCDC56	0.802535	7.646563e-25	1.324920e-20	3.680333e-22
37	7978201	7979473	NM_016029	DHRS7	0.802195	8.279031e-25	1.434508e-20	3.877048e-22
38	7978201	8140828	NM_003130	SRI	0.802095	8.472570e-25	1.468042e-20	3.863269e-22
39	7978201	8093156	NM_007362	NCBP2	0.801473	9.791992e-25	1.696658e-20	4.350406e-22
40	7978201	7929624	NM_002629	PGAM1	0.801388	9.987417e-25	1.730520e-20	4.326299e-22
41	7978201	8001185	NM_005880	DNAJA2	0.798559	1.914602e-24	3.317430e-20	8.091293e-22
42	7978201	8039796	NM_014453	CHMP2A	0.798081	2.134924e-24	3.699183e-20	8.807578e-22
43	7978201	7917472	NM_001514	GTF2B	0.797608	2.377581e-24	4.119634e-20	9.580544e-22
44	7978201	7973564	NM_176783	PSME1	0.796732	2.898873e-24	5.022877e-20	1.141563e-21
45	7978201	7975976	NM_012111	AHSA1	0.795783	3.589780e-24	6.220011e-20	1.382225e-21
46	7978201	8139421	NM_012412	H2AFV	0.795488	3.835615e-24	6.645970e-20	1.444776e-21
47	7978201	7936871	NM_000274	OAT	0.795070	4.213078e-24	7.300000e-20	1.553192e-21
48	7978201	8148270	NM_005005	NDUFB9	0.794856	4.419089e-24	7.656956e-20	1.595199e-21
49	7978201	8160587	NM_002493	NDUFB6	0.794397	4.896683e-24	8.484483e-20	1.731527e-21
50	7978201	7983512	NM_021199	SQRDL	0.792943	6.762656e-24	1.171765e-19	2.343531e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation