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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 13154.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
13154 8148270 NM_005005 NDUFB9 link to infopage NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa

Fetching correlation data, please wait...
Getting list of correlations for id 13154.
Getting list of p-values for id 13154.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.113 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8148270 8028514 NM_013234 EIF3K link to infopage 0.855388 3.433209e-31 5.948721e-27 5.948721e-27
2 8148270 8015712 NM_001040431 CCDC56 link to infopage 0.837638 8.298493e-29 1.437880e-24 7.189399e-25
3 8148270 7899737 NM_003757 EIF3I link to infopage 0.832402 3.696348e-28 6.404663e-24 2.134888e-24
4 8148270 8042720 NM_006429 CCT7 link to infopage 0.825106 2.724675e-27 4.721044e-23 1.180261e-23
5 8148270 8009227 NM_002805 PSMC5 link to infopage 0.819805 1.098528e-26 1.903419e-22 3.806839e-23
6 8148270 8165309 NM_003792 EDF1 link to infopage 0.819346 1.236809e-26 2.143020e-22 3.571699e-23
7 8148270 8039939 NM_017971 MRPL20 link to infopage 0.810772 1.066971e-25 1.848741e-21 2.641059e-22
8 8148270 7911559 NM_017971 MRPL20 link to infopage 0.810772 1.066971e-25 1.848741e-21 2.310927e-22
9 8148270 8139706 NM_014302 SEC61G link to infopage 0.795952 3.456179e-24 5.988521e-20 6.653912e-21
10 8148270 7978201 NM_006156 NEDD8 link to infopage 0.794856 4.419089e-24 7.656956e-20 7.656956e-21
11 8148270 8073645 NM_015380 SAMM50 link to infopage 0.793828 5.557093e-24 9.628775e-20 8.753432e-21
12 8148270 7952056 NM_000732 CD3D link to infopage 0.792998 6.680879e-24 1.157596e-19 9.646633e-21
13 8148270 7958819 NM_006817 ERP29 link to infopage 0.785468 3.419047e-23 5.924182e-19 4.557063e-20
14 8148270 7913256 NM_005216 DDOST link to infopage 0.784912 3.846967e-23 6.665640e-19 4.761171e-20
15 8148270 8172358 NM_153477 UXT link to infopage 0.783948 4.715516e-23 8.170574e-19 5.447050e-20
16 8148270 8119648 NM_057161 KLHDC3 link to infopage 0.783479 5.205107e-23 9.018889e-19 5.636806e-20
17 8148270 8052562 NM_006430 CCT4 link to infopage 0.783072 5.669811e-23 9.824081e-19 5.778871e-20
18 8148270 8093314 NM_004547 NDUFB4 link to infopage 0.781487 7.893908e-23 1.367777e-18 7.598764e-20
19 8148270 8081945 NM_004547 NDUFB4 link to infopage 0.781487 7.893908e-23 1.367777e-18 7.198829e-20
20 8148270 8064502 NM_003091 SNRPB link to infopage 0.777544 1.777995e-22 3.080732e-18 1.540366e-19
21 8148270 7929243 NM_017838 NHP2 link to infopage 0.777239 1.891853e-22 3.278014e-18 1.560959e-19
22 8148270 7920984 NM_005998 CCT3 link to infopage 0.775083 2.926248e-22 5.070310e-18 2.304686e-19
23 8148270 8000323 NM_005003 NDUFAB1 link to infopage 0.773533 3.992121e-22 6.917149e-18 3.007456e-19
24 8148270 7942586 NM_001005 RPS3 link to infopage 0.769540 8.789324e-22 1.522926e-17 6.345526e-19
25 8148270 8002919 NM_001130089 KARS link to infopage 0.769148 9.488119e-22 1.644006e-17 6.576026e-19
26 8148270 7975976 NM_012111 AHSA1 link to infopage 0.766683 1.530658e-21 2.652172e-17 1.020066e-18
27 8148270 7906662 NM_016406 UFC1 link to infopage 0.766178 1.687223e-21 2.923451e-17 1.082760e-18
28 8148270 7912670 NM_006004 UQCRH link to infopage 0.763258 2.946452e-21 5.105318e-17 1.823328e-18
29 8148270 7940688 NM_002696 POLR2G link to infopage 0.762328 3.513278e-21 6.087457e-17 2.099123e-18
30 8148270 7897404 NM_007262 PARK7 link to infopage 0.762046 3.705063e-21 6.419762e-17 2.139921e-18
31 8148270 8043100 NM_021103 TMSB10 link to infopage 0.759870 5.571271e-21 9.653341e-17 3.113981e-18
32 8148270 7918345 NM_002790 PSMA5 link to infopage 0.759407 6.073975e-21 1.052438e-16 3.288867e-18
33 8148270 8164067 NM_002799 PSMB7 link to infopage 0.758191 7.611082e-21 1.318772e-16 3.996279e-18
34 8148270 8023063 NM_001001937 ATP5A1 link to infopage 0.757838 8.123047e-21 1.407480e-16 4.139648e-18
35 8148270 8090448 NM_003707 RUVBL1 link to infopage 0.756351 1.068076e-20 1.850656e-16 5.287589e-18
36 8148270 8143781 NM_024711 GIMAP6 link to infopage 0.755969 1.145399e-20 1.984632e-16 5.512867e-18
37 8148270 7957746 NM_213611 SLC25A3 link to infopage 0.755576 1.230617e-20 2.132290e-16 5.762946e-18
38 8148270 8078905 NM_002295 RPSA link to infopage 0.753974 1.647204e-20 2.854110e-16 7.510817e-18
39 8148270 8036737 NM_001020 RPS16 link to infopage 0.753783 1.705174e-20 2.954555e-16 7.575782e-18
40 8148270 8085026 NM_000996 RPL35A link to infopage 0.753744 1.717131e-20 2.975272e-16 7.438180e-18
41 8148270 8000413 NM_145080 NSMCE1 link to infopage 0.751166 2.730872e-20 4.731783e-16 1.154093e-17
42 8148270 7929116 NM_006413 RPP30 link to infopage 0.750287 3.194504e-20 5.535117e-16 1.317885e-17
43 8148270 8018600 NM_014230 SRP68 link to infopage 0.750008 3.357213e-20 5.817042e-16 1.352801e-17
44 8148270 7918050 NM_002295 RPSA link to infopage 0.749614 3.600728e-20 6.238981e-16 1.417950e-17
45 8148270 7900576 NM_006347 PPIH link to infopage 0.748418 4.449861e-20 7.710275e-16 1.713394e-17
46 8148270 8172154 NM_002952 RPS2 link to infopage 0.747969 4.816567e-20 8.345666e-16 1.814275e-17
47 8148270 8034806 NM_005804 DDX39 link to infopage 0.747462 5.266013e-20 9.124421e-16 1.941366e-17
48 8148270 8022972 NM_000972 RPL7A link to infopage 0.747169 5.544211e-20 9.606454e-16 2.001345e-17
49 8148270 8073457 NM_001469 XRCC6 link to infopage 0.746000 6.802534e-20 1.178675e-15 2.405459e-17
50 8148270 7941709 NM_002896 RBM4 link to infopage 0.745452 7.484882e-20 1.296905e-15 2.593811e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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