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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id Label1 AccNum GeneSym Info Gene Name
17160 8013348 NM_002952 RPS2 link to infopage ribosomal protein S2
17178 7998655 NM_002952 RPS2 link to infopage ribosomal protein S2
17213 8172154 NM_002952 RPS2 link to infopage ribosomal protein S2

Fetching correlation data, please wait...
Getting list of correlations for id 17160.
Getting list of p-values for id 17160.
1 of 3 done.
Getting list of correlations for id 17178.
Getting list of p-values for id 17178.
2 of 3 done.
Getting list of correlations for id 17213.
Getting list of p-values for id 17213.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.300 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8013348 7998655 NM_002952 RPS2 link to infopage 0.995385 1.134746e-106 5.898522e-102 5.898522e-102
2 7998655 8013348 NM_002952 RPS2 link to infopage 0.995385 1.134746e-106 5.898522e-102 2.949261e-102
3 8172154 8013348 NM_002952 RPS2 link to infopage 0.944446 1.394668e-51 7.249624e-47 2.416541e-47
4 8013348 8172154 NM_002952 RPS2 link to infopage 0.944446 1.394668e-51 7.249624e-47 1.812406e-47
5 8013348 8036737 NM_001020 RPS16 link to infopage 0.934052 7.338589e-48 3.814672e-43 7.629344e-44
6 8172154 7998655 NM_002952 RPS2 link to infopage 0.931662 4.318027e-47 2.244554e-42 3.740923e-43
7 7998655 8172154 NM_002952 RPS2 link to infopage 0.931662 4.318027e-47 2.244554e-42 3.206505e-43
8 7998655 8036737 NM_001020 RPS16 link to infopage 0.929430 2.134163e-46 1.109359e-41 1.386699e-42
9 8172154 8042052 NM_002954 RPS27A link to infopage 0.919440 1.509150e-43 7.844715e-39 8.716350e-40
10 8172154 8001782 NM_002954 RPS27A link to infopage 0.914370 3.070404e-42 1.596027e-37 1.596027e-38
11 8172154 7908407 NM_002954 RPS27A link to infopage 0.907499 1.368558e-40 7.113903e-36 6.467185e-37
12 8172154 8036737 NM_001020 RPS16 link to infopage 0.896745 2.982690e-38 1.550432e-33 1.292027e-34
13 8013348 7942586 NM_001005 RPS3 link to infopage 0.890247 5.834956e-37 3.033068e-32 2.333130e-33
14 7998655 7942586 NM_001005 RPS3 link to infopage 0.884836 6.036379e-36 3.137770e-31 2.241264e-32
15 8013348 8076209 NM_000967 RPL3 link to infopage 0.884831 6.050670e-36 3.145199e-31 2.096799e-32
16 8172154 7942586 NM_001005 RPS3 link to infopage 0.883957 8.727436e-36 4.536608e-31 2.835380e-32
17 7998655 8076209 NM_000967 RPL3 link to infopage 0.883242 1.175238e-35 6.109006e-31 3.593533e-32
18 8172154 8022972 NM_000972 RPL7A link to infopage 0.882935 1.334710e-35 6.937957e-31 3.854421e-32
19 8013348 8028514 NM_013234 EIF3K link to infopage 0.876099 2.073350e-34 1.077748e-29 5.672358e-31
20 8013348 7901038 NM_001012 RPS8 link to infopage 0.872505 8.225045e-34 4.275460e-29 2.137730e-30
21 7998655 8029129 NM_001022 RPS19 link to infopage 0.872215 9.176010e-34 4.769782e-29 2.271325e-30
22 8172154 7918050 NM_002295 RPSA link to infopage 0.871793 1.075195e-33 5.588971e-29 2.540441e-30
23 8013348 8029129 NM_001022 RPS19 link to infopage 0.871781 1.079895e-33 5.613401e-29 2.440609e-30
24 8172154 8078905 NM_002295 RPSA link to infopage 0.871511 1.195236e-33 6.212957e-29 2.588732e-30
25 8013348 8056966 ENST00000405359 link to infopage 0.869080 2.942809e-33 1.529701e-28 6.118806e-30
26 7998655 8028514 NM_013234 EIF3K link to infopage 0.867948 4.449010e-33 2.312640e-28 8.894770e-30
27 7998655 8056966 ENST00000405359 link to infopage 0.863249 2.378407e-32 1.236320e-27 4.578962e-29
28 8172154 8048195 NM_000998 RPL37A link to infopage 0.861462 4.427092e-32 2.301247e-27 8.218738e-29
29 8013348 8042052 NM_002954 RPS27A link to infopage 0.860784 5.591732e-32 2.906638e-27 1.002289e-28
30 7998655 7901038 NM_001012 RPS8 link to infopage 0.859556 8.506239e-32 4.421628e-27 1.473876e-28
31 8172154 8029129 NM_001022 RPS19 link to infopage 0.859342 9.147398e-32 4.754909e-27 1.533842e-28
32 8013348 8001782 NM_002954 RPS27A link to infopage 0.858529 1.204675e-31 6.262019e-27 1.956881e-28
33 8013348 8089249 NM_000986 RPL24 link to infopage 0.858377 1.267803e-31 6.590165e-27 1.997020e-28
34 8013348 8085026 NM_000996 RPL35A link to infopage 0.857676 1.605167e-31 8.343819e-27 2.454065e-28
35 8013348 8026868 NM_000980 RPL18A link to infopage 0.856954 2.043287e-31 1.062121e-26 3.034632e-28
36 7998655 8085026 NM_000996 RPL35A link to infopage 0.855126 3.742082e-31 1.945172e-26 5.403255e-28
37 8013348 7939068 NM_001028 RPS25 link to infopage 0.854917 4.008271e-31 2.083539e-26 5.631187e-28
38 7998655 8026868 NM_000980 RPL18A link to infopage 0.854785 4.185510e-31 2.175670e-26 5.725447e-28
39 8013348 7918050 NM_002295 RPSA link to infopage 0.854205 5.060889e-31 2.630701e-26 6.745387e-28
40 8013348 8078905 NM_002295 RPSA link to infopage 0.853416 6.543688e-31 3.401474e-26 8.503686e-28
41 8013348 8160308 NM_001010 RPS6 link to infopage 0.853063 7.337891e-31 3.814309e-26 9.303193e-28
42 8013348 8030351 NM_012423 RPL13A link to infopage 0.852894 7.749943e-31 4.028498e-26 9.591661e-28
43 8172154 8086148 NM_000992 RPL29 link to infopage 0.851277 1.303342e-30 6.774903e-26 1.575559e-27
44 8172154 7911307 NR_024528 RPL23AP7 link to infopage 0.850857 1.490575e-30 7.748160e-26 1.760945e-27
45 7998655 8030351 NM_012423 RPL13A link to infopage 0.850296 1.781394e-30 9.259864e-26 2.057747e-27
46 8172154 8028514 NM_013234 EIF3K link to infopage 0.850091 1.900922e-30 9.881183e-26 2.148083e-27
47 8172154 7939068 NM_001028 RPS25 link to infopage 0.849208 2.512608e-30 1.306079e-25 2.778891e-27
48 7998655 8042052 NM_002954 RPS27A link to infopage 0.848432 3.205262e-30 1.666127e-25 3.471098e-27
49 7998655 8089249 NM_000986 RPL24 link to infopage 0.846855 5.238123e-30 2.722829e-25 5.556793e-27
50 8172154 8064502 NM_003091 SNRPB link to infopage 0.846423 5.984868e-30 3.110994e-25 6.221988e-27

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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