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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 4 variables:
id Label1 AccNum GeneSym Info Gene Name
12811 7911333 NR_024528 RPL23AP7 link to infopage ribosomal protein L23a pseudogene 7
12812 8069470 NR_024528 RPL23AP7 link to infopage ribosomal protein L23a pseudogene 7
13374 8054762 NR_024528 RPL23AP7 link to infopage ribosomal protein L23a pseudogene 7
13685 7911307 NR_024528 RPL23AP7 link to infopage ribosomal protein L23a pseudogene 7

Fetching correlation data, please wait...
Getting list of correlations for id 12811.
Getting list of p-values for id 12811.
1 of 4 done.
Getting list of correlations for id 12812.
Getting list of p-values for id 12812.
2 of 4 done.
Getting list of correlations for id 13374.
Getting list of p-values for id 13374.
3 of 4 done.
Getting list of correlations for id 13685.
Getting list of p-values for id 13685.
4 of 4 done.
Calculating corrections for multiple testing (n=69308), please wait...
Done; whole program took 0.419 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7911333 8069470 NR_024528 RPL23AP7 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
2 8069470 7911333 NR_024528 RPL23AP7 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
3 7911307 8069470 NR_024528 RPL23AP7 link to infopage 0.974799 6.273292e-69 4.347893e-64 1.449298e-64
4 8069470 7911307 NR_024528 RPL23AP7 link to infopage 0.974799 6.273292e-69 4.347893e-64 1.086973e-64
5 7911333 7911307 NR_024528 RPL23AP7 link to infopage 0.974799 6.273292e-69 4.347893e-64 8.695786e-65
6 7911307 7911333 NR_024528 RPL23AP7 link to infopage 0.974799 6.273292e-69 4.347893e-64 7.246488e-65
7 8054762 8074157 NR_026982 RPL23AP82 link to infopage 0.873525 5.586061e-34 3.871587e-29 5.530839e-30
8 8054762 8069470 NR_024528 RPL23AP7 link to infopage 0.872805 7.342156e-34 5.088701e-29 6.360877e-30
9 7911333 8054762 NR_024528 RPL23AP7 link to infopage 0.872805 7.342156e-34 5.088701e-29 5.654112e-30
10 8069470 8054762 NR_024528 RPL23AP7 link to infopage 0.872805 7.342156e-34 5.088701e-29 5.088701e-30
11 8054762 7911333 NR_024528 RPL23AP7 link to infopage 0.872805 7.342156e-34 5.088701e-29 4.626092e-30
12 7911307 8022972 NM_000972 RPL7A link to infopage 0.867811 4.676353e-33 3.241087e-28 2.700906e-29
13 7911307 7979886 GENSCAN00000025803 link to infopage 0.852557 8.642083e-31 5.989655e-26 4.607427e-27
14 7911307 7951660 ENST00000317197 link to infopage 0.851901 1.067208e-30 7.396607e-26 5.283291e-27
15 7911307 8172154 NM_002952 RPS2 link to infopage 0.850857 1.490575e-30 1.033088e-25 6.887253e-27
16 7911307 8005943 NM_000984 RPL23A link to infopage 0.850428 1.708473e-30 1.184108e-25 7.400677e-27
17 7911307 8042052 NM_002954 RPS27A link to infopage 0.848680 2.965589e-30 2.055390e-25 1.209053e-26
18 7911307 8054762 NR_024528 RPL23AP7 link to infopage 0.844476 1.086912e-29 7.533170e-25 4.185094e-26
19 8054762 7911307 NR_024528 RPL23AP7 link to infopage 0.844476 1.086912e-29 7.533170e-25 3.964826e-26
20 7911333 8022972 NM_000972 RPL7A link to infopage 0.844172 1.192326e-29 8.263770e-25 4.131885e-26
21 8069470 8022972 NM_000972 RPL7A link to infopage 0.844172 1.192326e-29 8.263770e-25 3.935128e-26
22 8069470 7979886 GENSCAN00000025803 link to infopage 0.842347 2.068292e-29 1.433492e-24 6.515873e-26
23 7911333 7979886 GENSCAN00000025803 link to infopage 0.842347 2.068292e-29 1.433492e-24 6.232574e-26
24 7911307 8001782 NM_002954 RPS27A link to infopage 0.841745 2.476428e-29 1.716363e-24 7.151512e-26
25 7911307 7901038 NM_001012 RPS8 link to infopage 0.840309 3.794460e-29 2.629865e-24 1.051946e-25
26 7911333 8005943 NM_000984 RPL23A link to infopage 0.839508 4.805773e-29 3.330785e-24 1.281071e-25
27 8069470 8005943 NM_000984 RPL23A link to infopage 0.839508 4.805773e-29 3.330785e-24 1.233624e-25
28 7911333 8074157 NR_026982 RPL23AP82 link to infopage 0.839343 5.044196e-29 3.496031e-24 1.248583e-25
29 8069470 8074157 NR_026982 RPL23AP82 link to infopage 0.839343 5.044196e-29 3.496031e-24 1.205528e-25
30 7911307 7964262 NM_001113201 NACA link to infopage 0.829751 7.721118e-28 5.351352e-23 1.783784e-24
31 7911307 7946812 NM_001017 RPS13 link to infopage 0.822129 5.995968e-27 4.155685e-22 1.340544e-23
32 7911333 7901038 NM_001012 RPS8 link to infopage 0.822034 6.146814e-27 4.260234e-22 1.331323e-23
33 8069470 7901038 NM_001012 RPS8 link to infopage 0.822034 6.146814e-27 4.260234e-22 1.290980e-23
34 7911307 7908407 NM_002954 RPS27A link to infopage 0.821340 7.371333e-27 5.108923e-22 1.502625e-23
35 7911307 8051773 ENST00000414823 link to infopage 0.821046 7.958826e-27 5.516103e-22 1.576029e-23
36 7911333 7951660 ENST00000317197 link to infopage 0.815404 3.377451e-26 2.340844e-21 6.502344e-23
37 8069470 7951660 ENST00000317197 link to infopage 0.815404 3.377451e-26 2.340844e-21 6.326605e-23
38 7911307 8074157 NR_026982 RPL23AP82 link to infopage 0.813960 4.850759e-26 3.361964e-21 8.847275e-23
39 7911333 8172154 NM_002952 RPS2 link to infopage 0.813145 5.942919e-26 4.118918e-21 1.056133e-22
40 8069470 8172154 NM_002952 RPS2 link to infopage 0.813145 5.942919e-26 4.118918e-21 1.029730e-22
41 7911307 8013348 NM_002952 RPS2 link to infopage 0.812745 6.562206e-26 4.548134e-21 1.109301e-22
42 7911307 7942586 NM_001005 RPS3 link to infopage 0.810528 1.132710e-25 7.850585e-21 1.869187e-22
43 7911307 8089249 NM_000986 RPL24 link to infopage 0.807868 2.159780e-25 1.496901e-20 3.481164e-22
44 7911307 8052562 NM_006430 CCT4 link to infopage 0.807429 2.400047e-25 1.663424e-20 3.780510e-22
45 8069470 8042052 NM_002954 RPS27A link to infopage 0.807275 2.490803e-25 1.726326e-20 3.836280e-22
46 7911333 8042052 NM_002954 RPS27A link to infopage 0.807275 2.490803e-25 1.726326e-20 3.752882e-22
47 7911307 8118974 NM_007104 RPL10A link to infopage 0.806963 2.684041e-25 1.860255e-20 3.957989e-22
48 7911307 8111814 NM_000997 RPL37 link to infopage 0.806245 3.186221e-25 2.208306e-20 4.600638e-22
49 7911307 8136631 NM_003143 SSBP1 link to infopage 0.806218 3.207115e-25 2.222787e-20 4.536300e-22
50 7911307 7939068 NM_001028 RPS25 link to infopage 0.804346 4.999474e-25 3.465035e-20 6.930071e-22

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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