Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
16426	8126450	NM_000986	RPL24		ribosomal protein L24
16711	8089249	NM_000986	RPL24		ribosomal protein L24

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8126450	8089249	NM_000986	RPL24		0.951702	1.242467e-54	4.305643e-50	4.305643e-50
2	8089249	8126450	NM_000986	RPL24		0.951702	1.242467e-54	4.305643e-50	2.152822e-50
3	8089249	7939068	NM_001028	RPS25		0.900154	5.785925e-39	2.005054e-34	6.683515e-35
4	8089249	8125835	NM_001014	RPS10		0.898656	1.197856e-38	4.151052e-34	1.037763e-34
5	8089249	8042052	NM_002954	RPS27A		0.894718	7.700165e-38	2.668415e-33	5.336831e-34
6	8089249	8001782	NM_002954	RPS27A		0.893692	1.235610e-37	4.281882e-33	7.136471e-34
7	8089249	8078905	NM_002295	RPSA		0.888905	1.053334e-36	3.650223e-32	5.214605e-33
8	8089249	7918050	NM_002295	RPSA		0.886943	2.464810e-36	8.541553e-32	1.067694e-32
9	8089249	7942586	NM_001005	RPS3		0.886210	3.373610e-36	1.169091e-31	1.298990e-32
10	8089249	8122136	NM_001016	RPS12		0.882586	1.541469e-35	5.341805e-31	5.341805e-32
11	8089249	8043100	NM_021103	TMSB10		0.876918	1.505924e-34	5.218628e-30	4.744207e-31
12	8089249	7908407	NM_002954	RPS27A		0.868751	3.319796e-33	1.150442e-28	9.587019e-30
13	8089249	8125750	NM_000976	RPL12		0.865610	1.032600e-32	3.578372e-28	2.752594e-29
14	8089249	8160308	NM_001010	RPS6		0.864333	1.624535e-32	5.629663e-28	4.021188e-29
15	8089249	8109750	NM_001002	RPLP0		0.864231	1.684122e-32	5.836157e-28	3.890771e-29
16	8089249	8164100	NM_007209	RPL35		0.863510	2.170865e-32	7.522915e-28	4.701822e-29
17	8089249	8115158	NM_001025071	RPS14		0.859284	9.329946e-32	3.233200e-27	1.901882e-28
18	8089249	8013348	NM_002952	RPS2		0.858377	1.267803e-31	4.393444e-27	2.440802e-28
19	8089249	7946812	NM_001017	RPS13		0.857240	1.856941e-31	6.435042e-27	3.386864e-28
20	8089249	7901038	NM_001012	RPS8		0.856376	2.476017e-31	8.580389e-27	4.290195e-28
21	8089249	8063903	NM_001024	RPS21		0.853623	6.117620e-31	2.120000e-26	1.009524e-27
22	8089249	8047635	NM_000976	RPL12		0.852204	9.683790e-31	3.355820e-26	1.525373e-27
23	8089249	8172358	NM_153477	UXT		0.850185	1.845167e-30	6.394243e-26	2.780106e-27
24	8126450	8125750	NM_000976	RPL12		0.849419	2.350996e-30	8.147141e-26	3.394642e-27
25	8089249	8085026	NM_000996	RPL35A		0.848907	2.762060e-30	9.571642e-26	3.828657e-27
26	8126450	8160308	NM_001010	RPS6		0.847216	4.683248e-30	1.622933e-25	6.242049e-27
27	8089249	8076209	NM_000967	RPL3		0.846867	5.217301e-30	1.808004e-25	6.696309e-27
28	8089249	7998655	NM_002952	RPS2		0.846855	5.238123e-30	1.815219e-25	6.482925e-27
29	8089249	7964828	GENSCAN00000052941			0.846113	6.586526e-30	2.282495e-25	7.870672e-27
30	8089249	7897404	NM_007262	PARK7		0.845197	8.724546e-30	3.023404e-25	1.007801e-26
31	8089249	7990965	NM_001021	RPS17		0.844714	1.010941e-29	3.503314e-25	1.130101e-26
32	8089249	7990916	NM_001021	RPS17		0.844714	1.010941e-29	3.503314e-25	1.094786e-26
33	8126450	8125835	NM_001014	RPS10		0.843299	1.552900e-29	5.381421e-25	1.630734e-26
34	8089249	8151935	NM_000989	RPL30		0.841811	2.427949e-29	8.413814e-25	2.474651e-26
35	8089249	8172154	NM_002952	RPS2		0.841621	2.569543e-29	8.904494e-25	2.544141e-26
36	8089249	8028514	NM_013234	EIF3K		0.841545	2.628381e-29	9.108392e-25	2.530109e-26
37	8089249	7978833	NM_001001	RPL36AL		0.837618	8.346686e-29	2.892461e-24	7.817461e-26
38	8089249	8139706	NM_014302	SEC61G		0.836633	1.109859e-28	3.846104e-24	1.012133e-25
39	8089249	8036737	NM_001020	RPS16		0.836468	1.163915e-28	4.033431e-24	1.034213e-25
40	8126450	8063473	NM_000976	RPL12		0.835205	1.672003e-28	5.794160e-24	1.448540e-25
41	8126450	8172358	NM_153477	UXT		0.833033	3.095329e-28	1.072655e-23	2.616233e-25
42	8089249	8022972	NM_000972	RPL7A		0.832297	3.806789e-28	1.319205e-23	3.140964e-25
43	8126450	8122136	NM_001016	RPS12		0.830327	6.586326e-28	2.282426e-23	5.307966e-25
44	8089249	8089230	GENSCAN00000044426			0.829496	8.283721e-28	2.870641e-23	6.524183e-25
45	8126450	7946812	NM_001017	RPS13		0.827641	1.375433e-27	4.766427e-23	1.059206e-24
46	8089249	7900228	NM_004552	NDUFS5		0.826958	1.655670e-27	5.737559e-23	1.247295e-24
47	8089249	8000323	NM_005003	NDUFAB1		0.825944	2.175924e-27	7.540447e-23	1.604350e-24
48	8089249	8030351	NM_012423	RPL13A		0.824202	3.467560e-27	1.201648e-22	2.503434e-24
49	8089249	8179326	NM_001040437	C6orf48		0.818837	1.409900e-26	4.885869e-22	9.971161e-24
50	8089249	8178090	NM_001040437	C6orf48		0.818837	1.409900e-26	4.885869e-22	9.771737e-24

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.