[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
11300	8178090	NM_001040437	C6orf48		chromosome 6 open reading frame 48
11301	8179326	NM_001040437	C6orf48		chromosome 6 open reading frame 48

Fetching correlation data, please wait...
Getting list of correlations for id 11300.
Getting list of p-values for id 11300.
1 of 2 done.
Getting list of correlations for id 11301.
Getting list of p-values for id 11301.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.218 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8179326	8178090	NM_001040437	C6orf48	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8178090	8179326	NM_001040437	C6orf48	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8179326	8160308	NM_001010	RPS6	0.853077	7.304947e-31	2.531456e-26	8.438188e-27
4	8178090	8160308	NM_001010	RPS6	0.853077	7.304947e-31	2.531456e-26	6.328641e-27
5	8179326	8048195	NM_000998	RPL37A	0.821770	6.586104e-27	2.282349e-22	4.564697e-23
6	8178090	8048195	NM_000998	RPL37A	0.821770	6.586104e-27	2.282349e-22	3.803914e-23
7	8179326	7942586	NM_001005	RPS3	0.818935	1.374980e-26	4.764857e-22	6.806938e-23
8	8178090	7942586	NM_001005	RPS3	0.818935	1.374980e-26	4.764857e-22	5.956071e-23
9	8179326	8089249	NM_000986	RPL24	0.818837	1.409900e-26	4.885869e-22	5.428743e-23
10	8178090	8089249	NM_000986	RPL24	0.818837	1.409900e-26	4.885869e-22	4.885869e-23
11	8179326	8036737	NM_001020	RPS16	0.815147	3.603226e-26	1.248662e-21	1.135147e-22
12	8178090	8036737	NM_001020	RPS16	0.815147	3.603226e-26	1.248662e-21	1.040552e-22
13	8178090	8078905	NM_002295	RPSA	0.814969	3.768203e-26	1.305833e-21	1.004487e-22
14	8179326	8078905	NM_002295	RPSA	0.814969	3.768203e-26	1.305833e-21	9.327378e-23
15	8179326	8013348	NM_002952	RPS2	0.813775	5.079940e-26	1.760402e-21	1.173602e-22
16	8178090	8013348	NM_002952	RPS2	0.813775	5.079940e-26	1.760402e-21	1.100251e-22
17	8178090	7918050	NM_002295	RPSA	0.810122	1.250662e-25	4.334045e-21	2.549438e-22
18	8179326	7918050	NM_002295	RPSA	0.810122	1.250662e-25	4.334045e-21	2.407803e-22
19	8178090	8125750	NM_000976	RPL12	0.809253	1.545166e-25	5.354617e-21	2.818219e-22
20	8179326	8125750	NM_000976	RPL12	0.809253	1.545166e-25	5.354617e-21	2.677308e-22
21	8179326	8047635	NM_000976	RPL12	0.808947	1.664454e-25	5.767999e-21	2.746666e-22
22	8178090	8047635	NM_000976	RPL12	0.808947	1.664454e-25	5.767999e-21	2.621818e-22
23	8178090	8172154	NM_002952	RPS2	0.806890	2.731281e-25	9.464982e-21	4.115209e-22
24	8179326	8172154	NM_002952	RPS2	0.806890	2.731281e-25	9.464982e-21	3.943742e-22
25	8178090	8076209	NM_000967	RPL3	0.805033	4.250173e-25	1.472855e-20	5.891420e-22
26	8179326	8076209	NM_000967	RPL3	0.805033	4.250173e-25	1.472855e-20	5.664827e-22
27	8179326	7939068	NM_001028	RPS25	0.795314	3.988254e-24	1.382090e-19	5.118850e-21
28	8178090	7939068	NM_001028	RPS25	0.795314	3.988254e-24	1.382090e-19	4.936034e-21
29	8179326	8022972	NM_000972	RPL7A	0.795163	4.125521e-24	1.429658e-19	4.929856e-21
30	8178090	8022972	NM_000972	RPL7A	0.795163	4.125521e-24	1.429658e-19	4.765527e-21
31	8179326	7998655	NM_002952	RPS2	0.794920	4.356043e-24	1.509543e-19	4.869494e-21
32	8178090	7998655	NM_002952	RPS2	0.794920	4.356043e-24	1.509543e-19	4.717322e-21
33	8179326	8151935	NM_000989	RPL30	0.793914	5.451873e-24	1.889292e-19	5.725128e-21
34	8178090	8151935	NM_000989	RPL30	0.793914	5.451873e-24	1.889292e-19	5.556741e-21
35	8178090	8139706	NM_014302	SEC61G	0.793207	6.379477e-24	2.210744e-19	6.316411e-21
36	8179326	8139706	NM_014302	SEC61G	0.793207	6.379477e-24	2.210744e-19	6.140955e-21
37	8179326	8042052	NM_002954	RPS27A	0.792755	7.049415e-24	2.442904e-19	6.602444e-21
38	8178090	8042052	NM_002954	RPS27A	0.792755	7.049415e-24	2.442904e-19	6.428696e-21
39	8179326	8001782	NM_002954	RPS27A	0.791356	9.592530e-24	3.324195e-19	8.523578e-21
40	8178090	8001782	NM_002954	RPS27A	0.791356	9.592530e-24	3.324195e-19	8.310489e-21
41	8178090	7897404	NM_007262	PARK7	0.784257	4.417874e-23	1.530970e-18	3.734073e-20
42	8179326	7897404	NM_007262	PARK7	0.784257	4.417874e-23	1.530970e-18	3.645167e-20
43	8178090	8109750	NM_001002	RPLP0	0.783937	4.726672e-23	1.637981e-18	3.809258e-20
44	8179326	8109750	NM_001002	RPLP0	0.783937	4.726672e-23	1.637981e-18	3.722684e-20
45	8178090	7955890	NM_031157	HNRNPA1	0.783758	4.908745e-23	1.701076e-18	3.780170e-20
46	8179326	7955890	NM_031157	HNRNPA1	0.783758	4.908745e-23	1.701076e-18	3.697992e-20
47	8178090	7966534	NM_001024662	RPL6	0.783730	4.937000e-23	1.710868e-18	3.640145e-20
48	8179326	7966534	NM_001024662	RPL6	0.783730	4.937000e-23	1.710868e-18	3.564308e-20
49	8179326	8022170	NM_001024662	RPL6	0.782203	6.800881e-23	2.356777e-18	4.809749e-20
50	8178090	8022170	NM_001024662	RPL6	0.782203	6.800881e-23	2.356777e-18	4.713554e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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