[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 13252.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
13252	8139706	NM_014302	SEC61G		Sec61 gamma subunit

Fetching correlation data, please wait...
Getting list of correlations for id 13252.
Getting list of p-values for id 13252.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.106 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8139706	8139421	NM_012412	H2AFV	0.885784	4.043616e-36	7.006373e-32	7.006373e-32
2	8139706	8064502	NM_003091	SNRPB	0.883725	9.615570e-36	1.666090e-31	8.330449e-32
3	8139706	8022972	NM_000972	RPL7A	0.882346	1.701818e-35	2.948740e-31	9.829135e-32
4	8139706	7897404	NM_007262	PARK7	0.877496	1.199846e-34	2.078974e-30	5.197435e-31
5	8139706	7928752	NM_014394	GHITM	0.876850	1.546626e-34	2.679839e-30	5.359679e-31
6	8139706	7950644	NM_004549	NDUFC2	0.874026	4.613293e-34	7.993452e-30	1.332242e-30
7	8139706	7955890	NM_031157	HNRNPA1	0.868910	3.132181e-33	5.427130e-29	7.753043e-30
8	8139706	7918345	NM_002790	PSMA5	0.865567	1.048689e-32	1.817063e-28	2.271329e-29
9	8139706	8140828	NM_003130	SRI	0.862036	3.629656e-32	6.289105e-28	6.987894e-29
10	8139706	7906662	NM_016406	UFC1	0.861364	4.578625e-32	7.933384e-28	7.933384e-29
11	8139706	7940688	NM_002696	POLR2G	0.859430	8.879338e-32	1.538523e-27	1.398657e-28
12	8139706	8023063	NM_001001937	ATP5A1	0.859143	9.788131e-32	1.695990e-27	1.413325e-28
13	8139706	8001185	NM_005880	DNAJA2	0.859072	1.002644e-31	1.737280e-27	1.336370e-28
14	8139706	8048195	NM_000998	RPL37A	0.856441	2.423738e-31	4.199611e-27	2.999722e-28
15	8139706	8130952	NM_002793	PSMB1	0.854775	4.200475e-31	7.278163e-27	4.852109e-28
16	8139706	7977657	NM_031314	HNRNPC	0.854674	4.341676e-31	7.522822e-27	4.701764e-28
17	8139706	8094704	NM_005339	UBE2K	0.852154	9.840343e-31	1.705036e-26	1.002962e-27
18	8139706	8122136	NM_001016	RPS12	0.851924	1.059550e-30	1.835882e-26	1.019934e-27
19	8139706	7990566	NM_000126	ETFA	0.850972	1.436891e-30	2.489700e-26	1.310369e-27
20	8139706	8028514	NM_013234	EIF3K	0.848588	3.053268e-30	5.290398e-26	2.645199e-27
21	8139706	8136631	NM_003143	SSBP1	0.847176	4.741427e-30	8.215471e-26	3.912129e-27
22	8139706	8049180	NM_004846	EIF4E2	0.845728	7.413070e-30	1.284463e-25	5.838467e-27
23	8139706	7964250	NM_006601	PTGES3	0.845578	7.763171e-30	1.345125e-25	5.848368e-27
24	8139706	8020241	NM_020232	PSMG2	0.845563	7.798868e-30	1.351310e-25	5.630458e-27
25	8139706	7980463	NM_012245	SNW1	0.843152	1.623461e-29	2.812971e-25	1.125188e-26
26	8139706	7978201	NM_006156	NEDD8	0.842674	1.874726e-29	3.248338e-25	1.249361e-26
27	8139706	8052562	NM_006430	CCT4	0.840806	3.274872e-29	5.674370e-25	2.101619e-26
28	8139706	7916372	NM_004872	TMEM59	0.840193	3.926502e-29	6.803451e-25	2.429804e-26
29	8139706	8064844	NM_002592	PCNA	0.839885	4.300594e-29	7.451639e-25	2.569531e-26
30	8139706	8146216	NM_001135694	VDAC3	0.839765	4.455335e-29	7.719759e-25	2.573253e-26
31	8139706	8053763	NM_031902	MRPS5	0.839348	5.036866e-29	8.727378e-25	2.815283e-26
32	8139706	8001782	NM_002954	RPS27A	0.839060	5.481007e-29	9.496942e-25	2.967794e-26
33	8139706	7976189	NM_002802	PSMC1	0.838994	5.587692e-29	9.681794e-25	2.933877e-26
34	8139706	7975976	NM_012111	AHSA1	0.837780	7.963627e-29	1.379858e-24	4.058405e-26
35	8139706	8164067	NM_002799	PSMB7	0.837482	8.682676e-29	1.504447e-24	4.298421e-26
36	8139706	8137252	NM_130759	GIMAP1	0.837178	9.483084e-29	1.643134e-24	4.564261e-26
37	8139706	8089249	NM_000986	RPL24	0.836633	1.109859e-28	1.923052e-24	5.197438e-26
38	8139706	8093156	NM_007362	NCBP2	0.835370	1.594906e-28	2.763494e-24	7.272351e-26
39	8139706	7942553	NM_014752	SPCS2	0.835208	1.670944e-28	2.895244e-24	7.423702e-26
40	8139706	7970546	NM_152726	EFHA1	0.833944	2.393315e-28	4.146896e-24	1.036724e-25
41	8139706	8042720	NM_006429	CCT7	0.833340	2.839097e-28	4.919304e-24	1.199830e-25
42	8139706	8006392	NM_002815	PSMD11	0.833103	3.035599e-28	5.259783e-24	1.252329e-25
43	8139706	8100834	NM_002092	GRSF1	0.832395	3.703064e-28	6.416299e-24	1.492162e-25
44	8139706	7942586	NM_001005	RPS3	0.832056	4.071891e-28	7.055365e-24	1.603492e-25
45	8139706	8080923	NM_002802	PSMC1	0.831821	4.347930e-28	7.533658e-24	1.674146e-25
46	8139706	8132943	NM_001762	CCT6A	0.830207	6.809341e-28	1.179855e-23	2.564901e-25
47	8139706	8018315	NM_006937	SUMO2	0.830162	6.894516e-28	1.194613e-23	2.541729e-25
48	8139706	7968297	NM_015932	POMP	0.829705	7.819455e-28	1.354877e-23	2.822660e-25
49	8139706	8005512	NM_002767	PRPSAP2	0.829683	7.866833e-28	1.363086e-23	2.781809e-25
50	8139706	8002919	NM_001130089	KARS	0.826927	1.669233e-27	2.892280e-23	5.784560e-25

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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