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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id Label1 AccNum GeneSym Info Gene Name
15091 8047059 NM_031314 HNRNPC link to infopage heterogeneous nuclear ribonucleoprotein C (C1/C2)
16770 7977657 NM_031314 HNRNPC link to infopage heterogeneous nuclear ribonucleoprotein C (C1/C2)

Fetching correlation data, please wait...
Getting list of correlations for id 15091.
Getting list of p-values for id 15091.
1 of 2 done.
Getting list of correlations for id 16770.
Getting list of p-values for id 16770.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.208 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7977657 7916372 NM_004872 TMEM59 link to infopage 0.929308 2.325694e-46 8.059460e-42 8.059460e-42
2 7977657 8048234 NM_152862 ARPC2 link to infopage 0.917404 5.180243e-43 1.795161e-38 8.975807e-39
3 7977657 8047059 NM_031314 HNRNPC link to infopage 0.916824 7.317675e-43 2.535867e-38 8.452891e-39
4 8047059 7977657 NM_031314 HNRNPC link to infopage 0.916824 7.317675e-43 2.535867e-38 6.339668e-39
5 7977657 7917472 NM_001514 GTF2B link to infopage 0.909678 4.240741e-41 1.469586e-36 2.939173e-37
6 7977657 7928752 NM_014394 GHITM link to infopage 0.904043 8.273262e-40 2.867016e-35 4.778361e-36
7 7977657 8168852 NM_019597 HNRNPH2 link to infopage 0.901908 2.431075e-39 8.424647e-35 1.203521e-35
8 7977657 8130952 NM_002793 PSMB1 link to infopage 0.898321 1.407925e-38 4.879022e-34 6.098777e-35
9 7977657 7976189 NM_002802 PSMC1 link to infopage 0.893041 1.663273e-37 5.763907e-33 6.404341e-34
10 7977657 8080923 NM_002802 PSMC1 link to infopage 0.892042 2.615642e-37 9.064246e-33 9.064246e-34
11 7977657 8168500 NM_000291 PGK1 link to infopage 0.887058 2.346002e-36 8.129837e-32 7.390761e-33
12 7977657 7980463 NM_012245 SNW1 link to infopage 0.882130 1.859734e-35 6.444724e-31 5.370603e-32
13 7977657 8091048 NR_023350 COPB2 link to infopage 0.880373 3.805266e-35 1.318677e-30 1.014367e-31
14 7977657 7974587 NM_018477 ACTR10 link to infopage 0.878333 8.613786e-35 2.985021e-30 2.132158e-31
15 7977657 8090546 NM_001127192 CNBP link to infopage 0.877356 1.267797e-34 4.393424e-30 2.928949e-31
16 7977657 8001185 NM_005880 DNAJA2 link to infopage 0.873325 6.027562e-34 2.088791e-29 1.305495e-30
17 7977657 8122705 NM_005389 PCMT1 link to infopage 0.869194 2.821653e-33 9.778155e-29 5.751856e-30
18 7977657 7942553 NM_014752 SPCS2 link to infopage 0.868806 3.253852e-33 1.127590e-28 6.264389e-30
19 8047059 8080923 NM_002802 PSMC1 link to infopage 0.868634 3.465058e-33 1.200781e-28 6.319900e-30
20 8047059 7976189 NM_002802 PSMC1 link to infopage 0.866116 8.617022e-33 2.986143e-28 1.493071e-29
21 7977657 7913814 NM_015484 SYF2 link to infopage 0.865532 1.061841e-32 3.679703e-28 1.752240e-29
22 7977657 8101945 NM_002106 H2AFZ link to infopage 0.865244 1.176304e-32 4.076365e-28 1.852893e-29
23 7977657 7978833 NM_001001 RPL36AL link to infopage 0.863080 2.523140e-32 8.743690e-28 3.801604e-29
24 7977657 7957177 NM_014999 RAB21 link to infopage 0.863028 2.569265e-32 8.903530e-28 3.709804e-29
25 8047059 8090546 NM_001127192 CNBP link to infopage 0.862994 2.600718e-32 9.012530e-28 3.605012e-29
26 7977657 8146216 NM_001135694 VDAC3 link to infopage 0.860605 5.945880e-32 2.060485e-27 7.924944e-29
27 7977657 8108424 NM_001033112 PAIP2 link to infopage 0.860577 6.002101e-32 2.079968e-27 7.703586e-29
28 7977657 8127637 NM_018247 TMEM30A link to infopage 0.860364 6.456606e-32 2.237472e-27 7.990972e-29
29 7977657 7978570 NM_021249 SNX6 link to infopage 0.860333 6.526294e-32 2.261622e-27 7.798696e-29
30 8047059 7917472 NM_001514 GTF2B link to infopage 0.859164 9.716983e-32 3.367323e-27 1.122441e-28
31 7977657 8078834 NM_020839 WDR48 link to infopage 0.858483 1.223402e-31 4.239576e-27 1.367605e-28
32 8047059 7982204 NM_005517 HMGN2 link to infopage 0.857688 1.598633e-31 5.539902e-27 1.731219e-28
33 7977657 7955890 NM_031157 HNRNPA1 link to infopage 0.857344 1.793793e-31 6.216210e-27 1.883700e-28
34 8047059 8000409 NM_005517 HMGN2 link to infopage 0.855853 2.944301e-31 1.020318e-26 3.000936e-28
35 7977657 7979473 NM_016029 DHRS7 link to infopage 0.855787 3.009553e-31 1.042930e-26 2.979801e-28
36 8047059 8168852 NM_019597 HNRNPH2 link to infopage 0.855693 3.104826e-31 1.075946e-26 2.988740e-28
37 7977657 8139706 NM_014302 SEC61G link to infopage 0.854674 4.341676e-31 1.504564e-26 4.066390e-28
38 7977657 8089527 NM_022488 ATG3 link to infopage 0.854672 4.343451e-31 1.505179e-26 3.960998e-28
39 7977657 7947015 NM_006292 TSG101 link to infopage 0.854195 5.078408e-31 1.759872e-26 4.512491e-28
40 7977657 8139421 NM_012412 H2AFV link to infopage 0.854054 5.316132e-31 1.842252e-26 4.605631e-28
41 7977657 8129317 NM_020755 SERINC1 link to infopage 0.853060 7.343670e-31 2.544875e-26 6.207013e-28
42 7977657 7989023 NM_004580 RAB27A link to infopage 0.851692 1.141455e-30 3.955597e-26 9.418087e-28
43 7977657 7964250 NM_006601 PTGES3 link to infopage 0.850735 1.549665e-30 5.370209e-26 1.248886e-27
44 8047059 7916372 NM_004872 TMEM59 link to infopage 0.849810 2.077830e-30 7.200512e-26 1.636480e-27
45 7977657 8147228 NM_001359 DECR1 link to infopage 0.849425 2.346468e-30 8.131449e-26 1.806989e-27
46 7977657 8055672 NM_015702 MMADHC link to infopage 0.847993 3.676742e-30 1.274138e-25 2.769865e-27
47 7977657 8130765 BC112329 FAM103A1 link to infopage 0.847843 3.853639e-30 1.335440e-25 2.841362e-27
48 7977657 8041236 NM_014946 SPAST link to infopage 0.847515 4.267264e-30 1.478778e-25 3.080787e-27
49 7977657 8003758 NM_000430 PAFAH1B1 link to infopage 0.847468 4.329848e-30 1.500466e-25 3.062175e-27
50 7977657 8042270 NM_001001521 UGP2 link to infopage 0.847412 4.406751e-30 1.527116e-25 3.054231e-27

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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