[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
14825	7979473	NM_016029	DHRS7		dehydrogenase/reductase (SDR family) member 7

Fetching correlation data, please wait...
Getting list of correlations for id 14825.
Getting list of p-values for id 14825.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.168 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7979473	8048234	NM_152862	ARPC2	0.875777	2.350140e-34	4.072088e-30	4.072088e-30
2	7979473	8107356	NM_152624	DCP2	0.872345	8.734368e-34	1.513404e-29	7.567020e-30
3	7979473	8124262	NM_016614	TDP2	0.869519	2.504332e-33	4.339255e-29	1.446418e-29
4	7979473	8076515	NM_014570	ARFGAP3	0.867893	4.539838e-33	7.866178e-29	1.966544e-29
5	7979473	7916372	NM_004872	TMEM59	0.867348	5.530822e-33	9.583255e-29	1.916651e-29
6	7979473	7908543	NM_133494	NEK7	0.865731	9.890175e-33	1.713671e-28	2.856118e-29
7	7979473	8122600	NM_001127715	STXBP5	0.864344	1.618220e-32	2.803889e-28	4.005556e-29
8	7979473	8054997	NM_006609	MAP3K2	0.859425	8.893514e-32	1.540979e-27	1.926224e-28
9	7979473	8023672	NM_004869	VPS4B	0.857865	1.506308e-31	2.609979e-27	2.899977e-28
10	7979473	8127637	NM_018247	TMEM30A	0.855993	2.811449e-31	4.871398e-27	4.871398e-28
11	7979473	7977657	NM_031314	HNRNPC	0.855787	3.009553e-31	5.214652e-27	4.740593e-28
12	7979473	8080923	NM_002802	PSMC1	0.855781	3.015807e-31	5.225489e-27	4.354574e-28
13	7979473	7976189	NM_002802	PSMC1	0.855538	3.268035e-31	5.662524e-27	4.355788e-28
14	7979473	7957177	NM_014999	RAB21	0.855257	3.584525e-31	6.210906e-27	4.436362e-28
15	7979473	8157233	NM_032303	HSDL2	0.853630	6.105196e-31	1.057847e-26	7.052315e-28
16	7979473	8135514	NM_001550	IFRD1	0.853504	6.359526e-31	1.101915e-26	6.886970e-28
17	7979473	8091048	NR_023350	COPB2	0.853096	7.259587e-31	1.257869e-26	7.399227e-28
18	7979473	8108424	NM_001033112	PAIP2	0.851878	1.075214e-30	1.863023e-26	1.035013e-27
19	7979473	7989023	NM_004580	RAB27A	0.851319	1.286217e-30	2.228628e-26	1.172962e-27
20	7979473	8146544	NM_001077619	UBXN2B	0.850608	1.613207e-30	2.795204e-26	1.397602e-27
21	7979473	8055672	NM_015702	MMADHC	0.846822	5.291912e-30	9.169296e-26	4.366331e-27
22	7979473	8127425	NM_018368	LMBRD1	0.846372	6.080652e-30	1.053595e-25	4.789067e-27
23	7979473	8114814	NM_000176	NR3C1	0.844814	9.806971e-30	1.699254e-25	7.388060e-27
24	7979473	8119000	NM_001315	MAPK14	0.844786	9.889778e-30	1.713602e-25	7.140007e-27
25	7979473	7920839	NM_006912	RIT1	0.843494	1.464439e-29	2.537434e-25	1.014974e-26
26	7979473	7980463	NM_012245	SNW1	0.843139	1.630035e-29	2.824361e-25	1.086293e-26
27	7979473	8138922	NM_015483	KBTBD2	0.842567	1.935958e-29	3.354434e-25	1.242383e-26
28	7979473	8041236	NM_014946	SPAST	0.841549	2.625705e-29	4.549558e-25	1.624842e-26
29	7979473	7973902	NM_003136	SRP54	0.840962	3.126965e-29	5.418093e-25	1.868308e-26
30	7979473	8167006	NM_006915	RP2	0.840729	3.350350e-29	5.805151e-25	1.935050e-26
31	7979473	7900395	NM_012421	RLF	0.840411	3.681345e-29	6.378667e-25	2.057635e-26
32	7979473	8136259	NM_013255	MKLN1	0.837637	8.300048e-29	1.438149e-24	4.494217e-26
33	7979473	8129317	NM_020755	SERINC1	0.837432	8.809539e-29	1.526429e-24	4.625542e-26
34	7979473	8078738	NM_005109	OXSR1	0.835949	1.351345e-28	2.341476e-24	6.886693e-26
35	7979473	8063337	NR_003605	NCRNA00275	0.835796	1.411787e-28	2.446204e-24	6.989154e-26
36	7979473	7954511	NM_015000	STK38L	0.834811	1.871130e-28	3.242107e-24	9.005852e-26
37	7979473	7932616	NM_005470	ABI1	0.833734	2.540388e-28	4.401730e-24	1.189657e-25
38	7979473	7980547	NM_005065	SEL1L	0.833547	2.678126e-28	4.640390e-24	1.221155e-25
39	7979473	7989735	NM_006660	CLPX	0.833474	2.733610e-28	4.736526e-24	1.214494e-25
40	7979473	7917472	NM_001514	GTF2B	0.833327	2.849764e-28	4.937786e-24	1.234447e-25
41	7979473	8168472	NM_000052	ATP7A	0.832028	4.104534e-28	7.111926e-24	1.734616e-25
42	7979473	8146243	NM_032410	HOOK3	0.831850	4.313988e-28	7.474847e-24	1.779726e-25
43	7979473	7900382	NM_006367	CAP1	0.831718	4.475055e-28	7.753928e-24	1.803239e-25
44	7979473	8054771	NM_025181	SLC35F5	0.831657	4.552516e-28	7.888144e-24	1.792760e-25
45	7979473	7972062	NM_012158	FBXL3	0.831281	5.054801e-28	8.758453e-24	1.946323e-25
46	7979473	7934812	NM_015045	WAPAL	0.830865	5.674543e-28	9.832280e-24	2.137452e-25
47	7979473	8075130	NM_012399	PITPNB	0.830739	5.877051e-28	1.018317e-23	2.166631e-25
48	7979473	8039796	NM_014453	CHMP2A	0.830433	6.395857e-28	1.108210e-23	2.308771e-25
49	7979473	7968132	NM_014089	NUPL1	0.830414	6.429893e-28	1.114107e-23	2.273689e-25
50	7979473	8116372	NM_018434	RNF130	0.830405	6.446365e-28	1.116962e-23	2.233923e-25

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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