[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
11162	7918345	NM_002790	PSMA5		proteasome (prosome, macropain) subunit, alpha type, 5

Fetching correlation data, please wait...
Getting list of correlations for id 11162.
Getting list of p-values for id 11162.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.256 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7918345	8018315	NM_006937	SUMO2	0.895341	5.766427e-38	9.991488e-34	9.991488e-34
2	7918345	8178322	NM_006937	SUMO2	0.894935	6.962735e-38	1.206433e-33	6.032165e-34
3	7918345	7920317	NM_004515	ILF2	0.888428	1.297464e-36	2.248116e-32	7.493719e-33
4	7918345	8117888	NM_006325	RAN	0.887758	1.735248e-36	3.006664e-32	7.516659e-33
5	7918345	8174636	NM_006937	SUMO2	0.882224	1.789771e-35	3.101137e-31	6.202273e-32
6	7918345	8073192	NM_006003	UQCRFS1	0.865850	9.478960e-33	1.642419e-28	2.737366e-29
7	7918345	8139706	NM_014302	SEC61G	0.865567	1.048689e-32	1.817063e-28	2.595805e-29
8	7918345	7905395	NM_002796	PSMB4	0.864586	1.485892e-32	2.574605e-28	3.218256e-29
9	7918345	7950644	NM_004549	NDUFC2	0.854703	4.299640e-31	7.449986e-27	8.277762e-28
10	7918345	8136631	NM_003143	SSBP1	0.853766	5.839396e-31	1.011792e-26	1.011792e-27
11	7918345	7957746	NM_213611	SLC25A3	0.852031	1.023780e-30	1.773903e-26	1.612639e-27
12	7918345	8002919	NM_001130089	KARS	0.849626	2.202246e-30	3.815831e-26	3.179859e-27
13	7918345	8100834	NM_002092	GRSF1	0.848214	3.431472e-30	5.945712e-26	4.573625e-27
14	7918345	8042720	NM_006429	CCT7	0.846821	5.292696e-30	9.170654e-26	6.550467e-27
15	7918345	8050908	NM_000182	HADHA	0.845462	8.045146e-30	1.393982e-25	9.293216e-27
16	7918345	8088384	NM_000925	PDHB	0.844654	1.029724e-29	1.784202e-25	1.115126e-26
17	7918345	8146216	NM_001135694	VDAC3	0.841603	2.583989e-29	4.477277e-25	2.633692e-26
18	7918345	7939137	NM_006360	EIF3M	0.841153	2.954264e-29	5.118852e-25	2.843807e-26
19	7918345	7975976	NM_012111	AHSA1	0.840863	3.219912e-29	5.579141e-25	2.936390e-26
20	7918345	8053763	NM_031902	MRPS5	0.840474	3.613240e-29	6.260660e-25	3.130330e-26
21	7918345	7906662	NM_016406	UFC1	0.839775	4.442629e-29	7.697743e-25	3.665592e-26
22	7918345	7942553	NM_014752	SPCS2	0.839234	5.207289e-29	9.022670e-25	4.101214e-26
23	7918345	8152628	NM_024295	DERL1	0.837836	7.834790e-29	1.357534e-24	5.902322e-26
24	7918345	8109732	NM_013283	MAT2B	0.837733	8.072661e-29	1.398750e-24	5.828125e-26
25	7918345	8020241	NM_020232	PSMG2	0.835671	1.463505e-28	2.535815e-24	1.014326e-25
26	7918345	8104166	NM_004168	SDHA	0.835311	1.622129e-28	2.810663e-24	1.081024e-25
27	7918345	7967149	NM_016237	ANAPC5	0.833233	2.925916e-28	5.069735e-24	1.877680e-25
28	7918345	7997230	NM_002811	PSMD7	0.832615	3.481387e-28	6.032199e-24	2.154357e-25
29	7918345	8067978	NM_021130	PPIA	0.831944	4.201422e-28	7.279805e-24	2.510277e-25
30	7918345	7931187	NM_004725	BUB3	0.830699	5.941080e-28	1.029411e-23	3.431370e-25
31	7918345	7964250	NM_006601	PTGES3	0.829390	8.529105e-28	1.477838e-23	4.767219e-25
32	7918345	8132943	NM_001762	CCT6A	0.829044	9.376995e-28	1.624752e-23	5.077349e-25
33	7918345	8084092	NM_002492	NDUFB5	0.828541	1.076356e-27	1.865002e-23	5.651522e-25
34	7918345	8018600	NM_014230	SRP68	0.825412	2.510181e-27	4.349391e-23	1.279233e-24
35	7918345	7928752	NM_014394	GHITM	0.825403	2.516351e-27	4.360081e-23	1.245738e-24
36	7918345	7969271	NM_001130912	SUGT1	0.825200	2.656674e-27	4.603220e-23	1.278672e-24
37	7918345	7976189	NM_002802	PSMC1	0.825180	2.670819e-27	4.627728e-23	1.250737e-24
38	7918345	8027650	NM_005499	UBA2	0.824206	3.463097e-27	6.000509e-23	1.579081e-24
39	7918345	7947934	NM_014342	MTCH2	0.823731	3.928970e-27	6.807727e-23	1.745571e-24
40	7918345	8004497	NM_001416	EIF4A1	0.822554	5.361250e-27	9.289438e-23	2.322360e-24
41	7918345	8080923	NM_002802	PSMC1	0.822475	5.473995e-27	9.484791e-23	2.313364e-24
42	7918345	8094704	NM_005339	UBE2K	0.822117	6.014669e-27	1.042162e-22	2.481337e-24
43	7918345	8137252	NM_130759	GIMAP1	0.821716	6.680146e-27	1.157469e-22	2.691788e-24
44	7918345	7973902	NM_003136	SRP54	0.821435	7.189844e-27	1.245784e-22	2.831328e-24
45	7918345	8005512	NM_002767	PRPSAP2	0.820876	8.319942e-27	1.441596e-22	3.203547e-24
46	7918345	7978201	NM_006156	NEDD8	0.819524	1.181371e-26	2.046962e-22	4.449917e-24
47	7918345	7949075	NM_016404	TRMT112	0.819369	1.229442e-26	2.130255e-22	4.532457e-24
48	7918345	8006392	NM_002815	PSMD11	0.818823	1.415200e-26	2.452117e-22	5.108577e-24
49	7918345	8123148	NM_014161	MRPL18	0.817647	1.912553e-26	3.313880e-22	6.763020e-24
50	7918345	7965515	NM_018838	NDUFA12	0.816286	2.703285e-26	4.683982e-22	9.367963e-24

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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