[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 14686.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
14686	8004497	NM_001416	EIF4A1		eukaryotic translation initiation factor 4A1

Fetching correlation data, please wait...
Getting list of correlations for id 14686.
Getting list of p-values for id 14686.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.107 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8004497	8073192	NM_006003	UQCRFS1	0.841613	2.576320e-29	4.463989e-25	4.463989e-25
2	8004497	8002919	NM_001130089	KARS	0.832864	3.246393e-28	5.625024e-24	2.812512e-24
3	8004497	8062349	NM_002951	RPN2	0.823025	4.736066e-27	8.206181e-23	2.735394e-23
4	8004497	7918345	NM_002790	PSMA5	0.822554	5.361250e-27	9.289438e-23	2.322360e-23
5	8004497	7920317	NM_004515	ILF2	0.814812	3.919797e-26	6.791832e-22	1.358366e-22
6	8004497	8073645	NM_015380	SAMM50	0.810634	1.103737e-25	1.912445e-21	3.187408e-22
7	8004497	7993185	NM_002484	NUBP1	0.807599	2.304161e-25	3.992419e-21	5.703456e-22
8	8004497	7990211	NM_000520	HEXA	0.805660	3.663150e-25	6.347139e-21	7.933924e-22
9	8004497	7913256	NM_005216	DDOST	0.802127	8.410584e-25	1.457302e-20	1.619224e-21
10	8004497	8178322	NM_006937	SUMO2	0.800605	1.197001e-24	2.074043e-20	2.074043e-21
11	8004497	8174636	NM_006937	SUMO2	0.796828	2.836501e-24	4.914806e-20	4.468005e-21
12	8004497	8075798	NM_003753	EIF3D	0.795554	3.779847e-24	6.549341e-20	5.457784e-21
13	8004497	8040142	NM_016207	CPSF3	0.792757	7.046624e-24	1.220969e-19	9.392066e-21
14	8004497	7914563	NM_003680	YARS	0.790901	1.059744e-23	1.836218e-19	1.311585e-20
15	8004497	7975976	NM_012111	AHSA1	0.790555	1.143112e-23	1.980670e-19	1.320446e-20
16	8004497	8018315	NM_006937	SUMO2	0.788554	1.765144e-23	3.058465e-19	1.911540e-20
17	8004497	7997230	NM_002811	PSMD7	0.787324	2.300214e-23	3.985580e-19	2.344459e-20
18	8004497	8028514	NM_013234	EIF3K	0.782190	6.818227e-23	1.181394e-18	6.563301e-20
19	8004497	7916590	NM_001625	AK2	0.779969	1.081270e-22	1.873517e-18	9.860617e-20
20	8004497	8051998	NM_139279	MCFD2	0.779667	1.150827e-22	1.994038e-18	9.970192e-20
21	8004497	8018600	NM_014230	SRP68	0.776632	2.139993e-22	3.707966e-18	1.765698e-19
22	8004497	8040908	NM_014748	SNX17	0.774155	3.525172e-22	6.108065e-18	2.776393e-19
23	8004497	7903619	NM_006513	SARS	0.773663	3.889890e-22	6.740012e-18	2.930440e-19
24	8004497	8136849	NM_001143679	GSTK1	0.773338	4.150962e-22	7.192371e-18	2.996821e-19
25	8004497	8138773	NM_022170	EIF4H	0.773265	4.211936e-22	7.298022e-18	2.919209e-19
26	8004497	8133434	NM_022170	EIF4H	0.773129	4.327493e-22	7.498248e-18	2.883941e-19
27	8004497	8062174	NM_198398	ERGIC3	0.772978	4.459314e-22	7.726654e-18	2.861724e-19
28	8004497	8042720	NM_006429	CCT7	0.770722	6.968833e-22	1.207490e-17	4.312463e-19
29	8004497	8007715	NM_021079	NMT1	0.770569	7.182515e-22	1.244514e-17	4.291429e-19
30	8004497	7944375	NM_016146	TRAPPC4	0.770307	7.561874e-22	1.310246e-17	4.367486e-19
31	8004497	8030007	NM_001425	EMP3	0.769700	8.517001e-22	1.475741e-17	4.760454e-19
32	8004497	8119648	NM_057161	KLHDC3	0.769431	8.978268e-22	1.555664e-17	4.861452e-19
33	8004497	8143781	NM_024711	GIMAP6	0.769391	9.047794e-22	1.567711e-17	4.750640e-19
34	8004497	7948997	NM_015459	ATL3	0.768639	1.047780e-21	1.815488e-17	5.339669e-19
35	8004497	7993680	BC050464	C16orf62	0.766809	1.494026e-21	2.588699e-17	7.396283e-19
36	8004497	7899737	NM_003757	EIF3I	0.765380	1.966416e-21	3.407209e-17	9.464470e-19
37	8004497	7999520	NM_015659	RSL1D1	0.765131	2.062282e-21	3.573316e-17	9.657610e-19
38	8004497	8117888	NM_006325	RAN	0.764234	2.447906e-21	4.241486e-17	1.116181e-18
39	8004497	7955908	NM_005337	NCKAP1L	0.764046	2.537055e-21	4.395955e-17	1.127168e-18
40	8004497	8089034	NM_031905	ARMC10	0.763895	2.611065e-21	4.524193e-17	1.131048e-18
41	8004497	7905395	NM_002796	PSMB4	0.763374	2.882595e-21	4.994672e-17	1.218213e-18
42	8004497	8006392	NM_002815	PSMD11	0.762983	3.104197e-21	5.378642e-17	1.280629e-18
43	8004497	8123148	NM_014161	MRPL18	0.761310	4.255499e-21	7.373503e-17	1.714768e-18
44	8004497	7967149	NM_016237	ANAPC5	0.759626	5.830924e-21	1.010324e-16	2.296191e-18
45	8004497	8064351	NM_177559	CSNK2A1	0.757998	7.886289e-21	1.366457e-16	3.036572e-18
46	8004497	8081135	NM_001134422	CDV3	0.757849	8.106330e-21	1.404584e-16	3.053443e-18
47	8004497	7937217	NM_004092	ECHS1	0.757357	8.877240e-21	1.538159e-16	3.272680e-18
48	8004497	8108015	NM_002154	HSPA4	0.756846	9.751993e-21	1.689728e-16	3.520266e-18
49	8004497	7961489	NM_016312	WBP11	0.755294	1.295691e-20	2.245044e-16	4.581723e-18
50	8004497	8137252	NM_130759	GIMAP1	0.755266	1.302322e-20	2.256533e-16	4.513066e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation