[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
14971	8062174	NM_198398	ERGIC3		ERGIC and golgi 3

Fetching correlation data, please wait...
Getting list of correlations for id 14971.
Getting list of p-values for id 14971.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.150 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8062174	8123148	NM_014161	MRPL18	0.847349	4.493702e-30	7.786238e-26	7.786238e-26
2	8062174	8050908	NM_000182	HADHA	0.840795	3.285457e-29	5.692712e-25	2.846356e-25
3	8062174	8006392	NM_002815	PSMD11	0.829692	7.849102e-28	1.360014e-23	4.533380e-24
4	8062174	8018600	NM_014230	SRP68	0.823520	4.154483e-27	7.198473e-23	1.799618e-23
5	8062174	8109368	NM_005754	G3BP1	0.817057	2.222988e-26	3.851771e-22	7.703542e-23
6	8062174	7920317	NM_004515	ILF2	0.814125	4.655743e-26	8.067005e-22	1.344501e-22
7	8062174	8028514	NM_013234	EIF3K	0.807267	2.495320e-25	4.323641e-21	6.176630e-22
8	8062174	7993680	BC050464	C16orf62	0.807143	2.570957e-25	4.454698e-21	5.568372e-22
9	8062174	8117888	NM_006325	RAN	0.804971	4.312629e-25	7.472492e-21	8.302769e-22
10	8062174	7928630			0.804799	4.492743e-25	7.784576e-21	7.784576e-22
11	8062174	8018315	NM_006937	SUMO2	0.803606	5.950464e-25	1.031037e-20	9.373063e-22
12	8062174	7899737	NM_003757	EIF3I	0.803012	6.839906e-25	1.185151e-20	9.876254e-22
13	8062174	8094704	NM_005339	UBE2K	0.802015	8.632079e-25	1.495680e-20	1.150523e-21
14	8062174	8168280	NM_001145408	NONO	0.797734	2.310129e-24	4.002761e-20	2.859115e-21
15	8062174	8133434	NM_022170	EIF4H	0.797451	2.463724e-24	4.268895e-20	2.845930e-21
16	8062174	7913256	NM_005216	DDOST	0.797336	2.528727e-24	4.381525e-20	2.738453e-21
17	8062174	7928600	NM_001099692	EIF5AL1	0.795615	3.728452e-24	6.460289e-20	3.800170e-21
18	8062174	7934753	NM_001099692	EIF5AL1	0.794289	5.015526e-24	8.690403e-20	4.828001e-21
19	8062174	8073192	NM_006003	UQCRFS1	0.793804	5.587410e-24	9.681306e-20	5.095424e-21
20	8062174	7906662	NM_016406	UFC1	0.792416	7.596921e-24	1.316318e-19	6.581592e-21
21	8062174	7918345	NM_002790	PSMA5	0.792406	7.614023e-24	1.319282e-19	6.282294e-21
22	8062174	8161988	NM_013438	UBQLN1	0.791455	9.386745e-24	1.626441e-19	7.392915e-21
23	8062174	8178322	NM_006937	SUMO2	0.791017	1.033318e-23	1.790430e-19	7.784478e-21
24	8062174	7919226	NM_006468	POLR3C	0.790617	1.127758e-23	1.954067e-19	8.141946e-21
25	8062174	7967149	NM_016237	ANAPC5	0.790172	1.242527e-23	2.152927e-19	8.611706e-21
26	8062174	8164177	NM_001006617	MAPKAP1	0.789777	1.354199e-23	2.346420e-19	9.024693e-21
27	8062174	7990211	NM_000520	HEXA	0.788213	1.899890e-23	3.291939e-19	1.219237e-20
28	8062174	8041000	NM_007266	GPN1	0.787554	2.189606e-23	3.793930e-19	1.354975e-20
29	8062174	8002919	NM_001130089	KARS	0.787196	2.364556e-23	4.097067e-19	1.412782e-20
30	8062174	8151625	AF495523	REXO1L1	-0.786497	2.746011e-23	4.758013e-19	1.586004e-20
31	8062174	8151617	AF495523	REXO1L1	-0.786497	2.746011e-23	4.758013e-19	1.534843e-20
32	8062174	8151605	AF495523	REXO1L1	-0.786497	2.746011e-23	4.758013e-19	1.486879e-20
33	8062174	8151621	AF495523	REXO1L1	-0.786497	2.746011e-23	4.758013e-19	1.441822e-20
34	8062174	8151613	AF495523	REXO1L1	-0.786497	2.746011e-23	4.758013e-19	1.399416e-20
35	8062174	8093156	NM_007362	NCBP2	0.786261	2.887957e-23	5.003963e-19	1.429704e-20
36	8062174	7903619	NM_006513	SARS	0.786193	2.929948e-23	5.076721e-19	1.410200e-20
37	8062174	8060758	NM_000311	PRNP	0.785100	3.696365e-23	6.404692e-19	1.730998e-20
38	8062174	8001185	NM_005880	DNAJA2	0.784691	4.031460e-23	6.985311e-19	1.838240e-20
39	8062174	8042720	NM_006429	CCT7	0.784685	4.036441e-23	6.993941e-19	1.793318e-20
40	8062174	8163784	NM_012164	FBXW2	0.783599	5.075234e-23	8.793857e-19	2.198464e-20
41	8062174	8064351	NM_177559	CSNK2A1	0.782879	5.903726e-23	1.022939e-18	2.494972e-20
42	8062174	8164155	NM_001123355	PPP6C	0.781523	7.836385e-23	1.357810e-18	3.232882e-20
43	8062174	7958414	NM_014301	ISCU	0.781488	7.892364e-23	1.367510e-18	3.180256e-20
44	8062174	8087210	NM_004157	PRKAR2A	0.781006	8.724369e-23	1.511671e-18	3.435617e-20
45	8062174	8134699	NM_006833	COPS6	0.781000	8.735867e-23	1.513664e-18	3.363697e-20
46	8062174	8062349	NM_002951	RPN2	0.780011	1.072020e-22	1.857488e-18	4.038018e-20
47	8062174	8139706	NM_014302	SEC61G	0.779958	1.083707e-22	1.877739e-18	3.995190e-20
48	8062174	7934852	NM_005271	GLUD1	0.779586	1.169988e-22	2.027238e-18	4.223411e-20
49	8062174	7959597	NM_006815	TMED2	0.779499	1.191187e-22	2.063970e-18	4.212184e-20
50	8062174	7999520	NM_015659	RSL1D1	0.779345	1.229527e-22	2.130402e-18	4.260804e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation