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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
14558 8060758 NM_000311 PRNP link to infopage prion protein

Fetching correlation data, please wait...
Getting list of correlations for id 14558.
Getting list of p-values for id 14558.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.123 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8060758 8133434 NM_022170 EIF4H link to infopage 0.812511 6.954132e-26 1.204942e-21 1.204942e-21
2 8060758 8138773 NM_022170 EIF4H link to infopage 0.808600 1.810245e-25 3.136612e-21 1.568306e-21
3 8060758 8123148 NM_014161 MRPL18 link to infopage 0.792143 8.069693e-24 1.398236e-19 4.660786e-20
4 8060758 8050908 NM_000182 HADHA link to infopage 0.790916 1.056218e-23 1.830109e-19 4.575273e-20
5 8060758 8006392 NM_002815 PSMD11 link to infopage 0.788141 1.929585e-23 3.343392e-19 6.686784e-20
6 8060758 8062174 NM_198398 ERGIC3 link to infopage 0.785100 3.696365e-23 6.404692e-19 1.067449e-19
7 8060758 7912198 NM_001428 ENO1 link to infopage 0.782987 5.771530e-23 1.000033e-18 1.428619e-19
8 8060758 8073192 NM_006003 UQCRFS1 link to infopage 0.777508 1.790946e-22 3.103172e-18 3.878965e-19
9 8060758 7990211 NM_000520 HEXA link to infopage 0.773455 4.055327e-22 7.026665e-18 7.807406e-19
10 8060758 7916590 NM_001625 AK2 link to infopage 0.766127 1.703906e-21 2.952358e-17 2.952358e-18
11 8060758 8150112 NM_000637 GSR link to infopage 0.765211 2.031258e-21 3.519561e-17 3.199601e-18
12 8060758 8027592 NM_001114093 LSM14A link to infopage 0.762904 3.150997e-21 5.459733e-17 4.549778e-18
13 8060758 7913256 NM_005216 DDOST link to infopage 0.762729 3.257188e-21 5.643729e-17 4.341330e-18
14 8060758 8061186 NM_006363 SEC23B link to infopage 0.762037 3.711965e-21 6.431721e-17 4.594087e-18
15 8060758 7989619 NM_000942 PPIB link to infopage 0.761034 4.482035e-21 7.766022e-17 5.177348e-18
16 8060758 8110803 NM_030782 CLPTM1L link to infopage 0.759195 6.317651e-21 1.094659e-16 6.841622e-18
17 8060758 7959282 NM_194271 RNF34 link to infopage 0.757890 8.046646e-21 1.394242e-16 8.201425e-18
18 8060758 8101324 NM_031370 HNRNPD link to infopage 0.757684 8.358108e-21 1.448209e-16 8.045607e-18
19 8060758 8030007 NM_001425 EMP3 link to infopage 0.756748 9.928693e-21 1.720345e-16 9.054446e-18
20 8060758 8019250 NM_000918 P4HB link to infopage 0.755531 1.240915e-20 2.150134e-16 1.075067e-17
21 8060758 7906703 NM_004550 NDUFS2 link to infopage 0.755040 1.357065e-20 2.351386e-16 1.119707e-17
22 8060758 7993680 BC050464 C16orf62 link to infopage 0.754725 1.437154e-20 2.490157e-16 1.131889e-17
23 8060758 8168280 NM_001145408 NONO link to infopage 0.754109 1.607396e-20 2.785135e-16 1.210928e-17
24 8060758 7978208 NM_012461 TINF2 link to infopage 0.753711 1.727425e-20 2.993109e-16 1.247129e-17
25 8060758 8164883 NM_033161 SURF4 link to infopage 0.751617 2.519081e-20 4.364812e-16 1.745925e-17
26 8060758 8018600 NM_014230 SRP68 link to infopage 0.749652 3.576819e-20 6.197555e-16 2.383675e-17
27 8060758 8053890 NM_020151 STARD7 link to infopage 0.749376 3.756154e-20 6.508288e-16 2.410477e-17
28 8060758 8160914 NM_007126 VCP link to infopage 0.748766 4.184921e-20 7.251213e-16 2.589719e-17
29 8060758 8062349 NM_002951 RPN2 link to infopage 0.748273 4.565216e-20 7.910150e-16 2.727638e-17
30 8060758 7987172 NM_020154 C15orf24 link to infopage 0.747618 5.123704e-20 8.877843e-16 2.959281e-17
31 8060758 8099340 NM_017491 WDR1 link to infopage 0.746658 6.064347e-20 1.050769e-15 3.389579e-17
32 8060758 7947934 NM_014342 MTCH2 link to infopage 0.745632 7.254439e-20 1.256977e-15 3.928052e-17
33 8060758 8157283 NM_004697 PRPF4 link to infopage 0.743510 1.048065e-19 1.815983e-15 5.502978e-17
34 8060758 8170097 NM_001042537 SLC9A6 link to infopage 0.742752 1.194235e-19 2.069251e-15 6.086032e-17
35 8060758 8093156 NM_007362 NCBP2 link to infopage 0.742724 1.199991e-19 2.079225e-15 5.940643e-17
36 8060758 8109368 NM_005754 G3BP1 link to infopage 0.742631 1.219353e-19 2.112773e-15 5.868813e-17
37 8060758 8163784 NM_012164 FBXW2 link to infopage 0.742076 1.341264e-19 2.324008e-15 6.281104e-17
38 8060758 8064522 NM_174856 IDH3B link to infopage 0.741309 1.529324e-19 2.649860e-15 6.973316e-17
39 8060758 8152628 NM_024295 DERL1 link to infopage 0.741231 1.549659e-19 2.685094e-15 6.884857e-17
40 8060758 8094704 NM_005339 UBE2K link to infopage 0.740868 1.648828e-19 2.856924e-15 7.142310e-17
41 8060758 7920317 NM_004515 ILF2 link to infopage 0.740246 1.832954e-19 3.175960e-15 7.746243e-17
42 8060758 8025429 NM_005968 HNRNPM link to infopage 0.739127 2.215909e-19 3.839505e-15 9.141679e-17
43 8060758 7918345 NM_002790 PSMA5 link to infopage 0.739110 2.222049e-19 3.850144e-15 8.953824e-17
44 8060758 8023481 NM_004539 NARS link to infopage 0.738472 2.475077e-19 4.288567e-15 9.746743e-17
45 8060758 7975976 NM_012111 AHSA1 link to infopage 0.738129 2.622422e-19 4.543871e-15 1.009749e-16
46 8060758 8110589 NM_015455 CNOT6 link to infopage 0.737311 3.008544e-19 5.212903e-15 1.133240e-16
47 8060758 8119648 NM_057161 KLHDC3 link to infopage 0.734872 4.518595e-19 7.829370e-15 1.665823e-16
48 8060758 8117888 NM_006325 RAN link to infopage 0.734332 4.941844e-19 8.562734e-15 1.783903e-16
49 8060758 8134699 NM_006833 COPS6 link to infopage 0.734190 5.059306e-19 8.766260e-15 1.789033e-16
50 8060758 7997230 NM_002811 PSMD7 link to infopage 0.732896 6.262072e-19 1.085029e-14 2.170058e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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