[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
12153	7990211	NM_000520	HEXA		hexosaminidase A (alpha polypeptide)

Fetching correlation data, please wait...
Getting list of correlations for id 12153.
Getting list of p-values for id 12153.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.374 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7990211	8163784	NM_012164	FBXW2	0.872270	8.987636e-34	1.557288e-29	1.557288e-29
2	7990211	8050908	NM_000182	HADHA	0.863839	1.933978e-32	3.351003e-28	1.675502e-28
3	7990211	8133434	NM_022170	EIF4H	0.860438	6.294310e-32	1.090615e-27	3.635384e-28
4	7990211	8160914	NM_007126	VCP	0.857870	1.503871e-31	2.605758e-27	6.514394e-28
5	7990211	8073192	NM_006003	UQCRFS1	0.854942	3.975427e-31	6.888223e-27	1.377645e-27
6	7990211	8006392	NM_002815	PSMD11	0.853876	5.635149e-31	9.764022e-27	1.627337e-27
7	7990211	8138773	NM_022170	EIF4H	0.847707	4.019690e-30	6.964917e-26	9.949881e-27
8	7990211	8137252	NM_130759	GIMAP1	0.836302	1.221004e-28	2.115634e-24	2.644543e-25
9	7990211	8099340	NM_017491	WDR1	0.834250	2.194575e-28	3.802539e-24	4.225044e-25
10	7990211	8013696	NM_014680	KIAA0100	0.831686	4.515339e-28	7.823728e-24	7.823728e-25
11	7990211	7978208	NM_012461	TINF2	0.830742	5.871373e-28	1.017333e-23	9.248480e-25
12	7990211	8110803	NM_030782	CLPTM1L	0.829388	8.531977e-28	1.478336e-23	1.231946e-24
13	7990211	8164177	NM_001006617	MAPKAP1	0.826859	1.700454e-27	2.946377e-23	2.266444e-24
14	7990211	8117888	NM_006325	RAN	0.826483	1.882284e-27	3.261434e-23	2.329596e-24
15	7990211	8101324	NM_031370	HNRNPD	0.824171	3.495524e-27	6.056695e-23	4.037796e-24
16	7990211	8002919	NM_001130089	KARS	0.822115	6.016866e-27	1.042542e-22	6.515890e-24
17	7990211	7963935	NM_032364	DNAJC14	0.821871	6.414286e-27	1.111403e-22	6.537667e-24
18	7990211	8168280	NM_001145408	NONO	0.819366	1.230481e-26	2.132055e-22	1.184475e-23
19	7990211	8132580	NM_006555	YKT6	0.817270	2.105369e-26	3.647973e-22	1.919986e-23
20	7990211	7913256	NM_005216	DDOST	0.816667	2.454534e-26	4.252971e-22	2.126486e-23
21	7990211	7947894	NM_198700	CELF1	0.816631	2.476982e-26	4.291866e-22	2.043746e-23
22	7990211	7993680	BC050464	C16orf62	0.815741	3.102721e-26	5.376084e-22	2.443675e-23
23	7990211	7941709	NM_002896	RBM4	0.815671	3.157813e-26	5.471543e-22	2.378932e-23
24	7990211	8062349	NM_002951	RPN2	0.815141	3.608655e-26	6.252717e-22	2.605299e-23
25	7990211	8143781	NM_024711	GIMAP6	0.813329	5.676362e-26	9.835433e-22	3.934173e-23
26	7990211	7918345	NM_002790	PSMA5	0.813231	5.817077e-26	1.007925e-21	3.876635e-23
27	7990211	8053890	NM_020151	STARD7	0.812604	6.795570e-26	1.177468e-21	4.360994e-23
28	7990211	8104166	NM_004168	SDHA	0.812521	6.937120e-26	1.201995e-21	4.292838e-23
29	7990211	8018315	NM_006937	SUMO2	0.811104	9.834884e-26	1.704090e-21	5.876174e-23
30	7990211	7920317	NM_004515	ILF2	0.810795	1.061133e-25	1.838626e-21	6.128752e-23
31	7990211	8009932	NM_013260	SAP30BP	0.810493	1.142310e-25	1.979281e-21	6.384776e-23
32	7990211	7906703	NM_004550	NDUFS2	0.810221	1.220789e-25	2.115261e-21	6.610191e-23
33	7990211	7987172	NM_020154	C15orf24	0.808198	1.994501e-25	3.455872e-21	1.047234e-22
34	7990211	8019046	NM_014740	EIF4A3	0.808096	2.044372e-25	3.542284e-21	1.041848e-22
35	7990211	8018600	NM_014230	SRP68	0.806821	2.776667e-25	4.811130e-21	1.374609e-22
36	7990211	8093156	NM_007362	NCBP2	0.805729	3.603257e-25	6.243364e-21	1.734268e-22
37	7990211	8004497	NM_001416	EIF4A1	0.805660	3.663150e-25	6.347139e-21	1.715443e-22
38	7990211	7978718	NM_006364	SEC23A	0.805455	3.845461e-25	6.663030e-21	1.753429e-22
39	7990211	7963244	NM_005653	TFCP2	0.805108	4.175773e-25	7.235362e-21	1.855221e-22
40	7990211	7898337	NM_018090	NECAP2	0.805077	4.206275e-25	7.288212e-21	1.822053e-22
41	7990211	7980463	NM_012245	SNW1	0.804784	4.507993e-25	7.810999e-21	1.905122e-22
42	7990211	8110894	NM_017755	NSUN2	0.804198	5.176952e-25	8.970105e-21	2.135739e-22
43	7990211	7944375	NM_016146	TRAPPC4	0.803271	6.437219e-25	1.115377e-20	2.593900e-22
44	7990211	8171516	NM_002893	RBBP7	0.802107	8.450465e-25	1.464212e-20	3.327755e-22
45	7990211	8109368	NM_005754	G3BP1	0.801872	8.925041e-25	1.546442e-20	3.436538e-22
46	7990211	8040908	NM_014748	SNX17	0.801502	9.725418e-25	1.685123e-20	3.663311e-22
47	7990211	8061186	NM_006363	SEC23B	0.801150	1.055181e-24	1.828312e-20	3.890026e-22
48	7990211	7952557	NM_003139	SRPR	0.799586	1.513357e-24	2.622193e-20	5.462902e-22
49	7990211	8066716	NM_133171	ELMO2	0.798071	2.139788e-24	3.707611e-20	7.566553e-22
50	7990211	7920515	NM_017582	UBE2Q1	0.794417	4.874629e-24	8.446270e-20	1.689254e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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