[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
15154	8040908	NM_014748	SNX17		sorting nexin 17

Fetching correlation data, please wait...
Getting list of correlations for id 15154.
Getting list of p-values for id 15154.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.152 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8040908	7913256	NM_005216	DDOST	0.869875	2.195925e-33	3.804879e-29	3.804879e-29
2	8040908	8119648	NM_057161	KLHDC3	0.850241	1.812946e-30	3.141292e-26	1.570646e-26
3	8040908	8110803	NM_030782	CLPTM1L	0.844451	1.095347e-29	1.897908e-25	6.326358e-26
4	8040908	7916590	NM_001625	AK2	0.812056	7.782541e-26	1.348481e-21	3.371202e-22
5	8040908	8030007	NM_001425	EMP3	0.803368	6.292662e-25	1.090329e-20	2.180659e-21
6	8040908	8027621	NM_000175	GPI	0.803171	6.590103e-25	1.141867e-20	1.903112e-21
7	8040908	8136849	NM_001143679	GSTK1	0.802815	7.162771e-25	1.241093e-20	1.772991e-21
8	8040908	7990211	NM_000520	HEXA	0.801502	9.725418e-25	1.685123e-20	2.106404e-21
9	8040908	8133434	NM_022170	EIF4H	0.801500	9.729218e-25	1.685782e-20	1.873091e-21
10	8040908	8004247	NM_001142798	C17orf49	0.798597	1.898206e-24	3.289022e-20	3.289022e-21
11	8040908	7899737	NM_003757	EIF3I	0.796871	2.809425e-24	4.867891e-20	4.425355e-21
12	8040908	8138773	NM_022170	EIF4H	0.794160	5.162281e-24	8.944684e-20	7.453903e-21
13	8040908	8073192	NM_006003	UQCRFS1	0.790806	1.081972e-23	1.874733e-19	1.442102e-20
14	8040908	8075924	NM_002405	MFNG	0.788802	1.673013e-23	2.898830e-19	2.070593e-20
15	8040908	7978208	NM_012461	TINF2	0.786216	2.915482e-23	5.051655e-19	3.367770e-20
16	8040908	8077550	NM_001077525	MTMR14	0.785847	3.154210e-23	5.465300e-19	3.415813e-20
17	8040908	8080438	NM_014041	SPCS1	0.783744	4.922614e-23	8.529414e-19	5.017302e-20
18	8040908	8007715	NM_021079	NMT1	0.779120	1.287766e-22	2.231313e-18	1.239618e-19
19	8040908	8013696	NM_014680	KIAA0100	0.778554	1.446475e-22	2.506307e-18	1.319109e-19
20	8040908	7990151	NM_182470	PKM2	0.775751	2.557453e-22	4.431299e-18	2.215649e-19
21	8040908	7948744	NM_198335	GANAB	0.774684	3.170536e-22	5.493588e-18	2.615994e-19
22	8040908	7915504	NM_022821	ELOVL1	0.774270	3.445004e-22	5.969159e-18	2.713254e-19
23	8040908	8004497	NM_001416	EIF4A1	0.774155	3.525172e-22	6.108065e-18	2.655681e-19
24	8040908	8035553	NM_007263	COPE	0.773919	3.696181e-22	6.404373e-18	2.668489e-19
25	8040908	7998033	NM_014972	TCF25	0.768420	1.093389e-21	1.894515e-17	7.578058e-19
26	8040908	8030881	NM_014225	PPP2R1A	0.766934	1.458364e-21	2.526908e-17	9.718876e-19
27	8040908	7912198	NM_001428	ENO1	0.765209	2.031760e-21	3.520430e-17	1.303863e-18
28	8040908	8064522	NM_174856	IDH3B	0.763262	2.944619e-21	5.102141e-17	1.822193e-18
29	8040908	7937217	NM_004092	ECHS1	0.762612	3.329831e-21	5.769599e-17	1.989517e-18
30	8040908	7920317	NM_004515	ILF2	0.761337	4.233727e-21	7.335778e-17	2.445259e-18
31	8040908	7941382	NM_182710	KAT5	0.760567	4.891620e-21	8.475711e-17	2.734100e-18
32	8040908	8157283	NM_004697	PRPF4	0.756694	1.002827e-20	1.737599e-16	5.429996e-18
33	8040908	8084423	NM_002808	PSMD2	0.756655	1.010008e-20	1.750041e-16	5.303155e-18
34	8040908	7989619	NM_000942	PPIB	0.756562	1.027473e-20	1.780303e-16	5.236185e-18
35	8040908	8028514	NM_013234	EIF3K	0.754435	1.515053e-20	2.625133e-16	7.500379e-18
36	8040908	8066716	NM_133171	ELMO2	0.753454	1.809829e-20	3.135890e-16	8.710807e-18
37	8040908	7949075	NM_016404	TRMT112	0.751434	2.603024e-20	4.510259e-16	1.218989e-17
38	8040908	7956166	NM_015292	ESYT1	0.751323	2.655389e-20	4.600992e-16	1.210787e-17
39	8040908	7905395	NM_002796	PSMB4	0.750783	2.924039e-20	5.066482e-16	1.299098e-17
40	8040908	8016099	NM_004247	EFTUD2	0.749125	3.926904e-20	6.804147e-16	1.701037e-17
41	8040908	7914563	NM_003680	YARS	0.748937	4.059615e-20	7.034095e-16	1.715633e-17
42	8040908	7947784	NM_032389	ARFGAP2	0.747646	5.098646e-20	8.834424e-16	2.103434e-17
43	8040908	7914834	NM_002794	PSMB2	0.747359	5.362278e-20	9.291219e-16	2.160749e-17
44	8040908	7919950	NM_002651	PI4KB	0.746605	6.120739e-20	1.060540e-15	2.410319e-17
45	8040908	8063369	NM_018683	RNF114	0.746333	6.418954e-20	1.112212e-15	2.471582e-17
46	8040908	7903619	NM_006513	SARS	0.745478	7.451867e-20	1.291185e-15	2.806924e-17
47	8040908	8143781	NM_024711	GIMAP6	0.744536	8.776419e-20	1.520690e-15	3.235511e-17
48	8040908	8134699	NM_006833	COPS6	0.744380	9.016494e-20	1.562288e-15	3.254767e-17
49	8040908	7920903	NM_003145	SSR2	0.743848	9.886138e-20	1.712971e-15	3.495859e-17
50	8040908	8149638	NM_003974	DOK2	0.743679	1.017918e-19	1.763746e-15	3.527491e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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