[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7352	7941382	NM_182710	KAT5		K(lysine) acetyltransferase 5

Fetching correlation data, please wait...
Getting list of correlations for id 7352.
Getting list of p-values for id 7352.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.133 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7941382	7913256	NM_005216	DDOST	0.796970	2.746893e-24	4.759542e-20	4.759542e-20
2	7941382	8030007	NM_001425	EMP3	0.780113	1.049526e-22	1.818513e-18	9.092566e-19
3	7941382	8064522	NM_174856	IDH3B	0.775773	2.546297e-22	4.411969e-18	1.470656e-18
4	7941382	7916590	NM_001625	AK2	0.774510	3.283197e-22	5.688796e-18	1.422199e-18
5	7941382	8040908	NM_014748	SNX17	0.760567	4.891620e-21	8.475711e-17	1.695142e-17
6	7941382	8004247	NM_001142798	C17orf49	0.751610	2.522359e-20	4.370492e-16	7.284153e-17
7	7941382	8007715	NM_021079	NMT1	0.749829	3.465873e-20	6.005318e-16	8.579026e-17
8	7941382	7941478	NM_005146	SART1	0.747822	4.942611e-20	8.564063e-16	1.070508e-16
9	7941382	8133434	NM_022170	EIF4H	0.746132	6.648553e-20	1.151995e-15	1.279994e-16
10	7941382	8116020	NM_006816	LMAN2	0.743814	9.944708e-20	1.723120e-15	1.723120e-16
11	7941382	8119648	NM_057161	KLHDC3	0.743227	1.100476e-19	1.906794e-15	1.733450e-16
12	7941382	8027621	NM_000175	GPI	0.742720	1.200878e-19	2.080762e-15	1.733968e-16
13	7941382	8138773	NM_022170	EIF4H	0.742097	1.336377e-19	2.315541e-15	1.781185e-16
14	7941382	7949075	NM_016404	TRMT112	0.737834	2.755689e-19	4.774782e-15	3.410559e-16
15	7941382	8134552	NM_005720	ARPC1B	0.734294	4.973108e-19	8.616904e-15	5.744603e-16
16	7941382	8030630	NM_007121	NR1H2	0.731821	7.469757e-19	1.294285e-14	8.089280e-16
17	7941382	8134699	NM_006833	COPS6	0.731745	7.564019e-19	1.310618e-14	7.709516e-16
18	7941382	7989619	NM_000942	PPIB	0.725903	1.942553e-18	3.365862e-14	1.869923e-15
19	7941382	8110803	NM_030782	CLPTM1L	0.722567	3.293161e-18	5.706060e-14	3.003189e-15
20	7941382	8165309	NM_003792	EDF1	0.716774	8.087502e-18	1.401321e-13	7.006607e-15
21	7941382	8028514	NM_013234	EIF3K	0.715794	9.395467e-18	1.627953e-13	7.752155e-15
22	7941382	7978208	NM_012461	TINF2	0.714760	1.099552e-17	1.905193e-13	8.659969e-15
23	7941382	8084423	NM_002808	PSMD2	0.714453	1.152109e-17	1.996260e-13	8.679390e-15
24	7941382	7915504	NM_022821	ELOVL1	0.713012	1.432417e-17	2.481950e-13	1.034146e-14
25	7941382	8072687	NM_006739	MCM5	0.711765	1.727875e-17	2.993888e-13	1.197555e-14
26	7941382	7914563	NM_003680	YARS	0.710349	2.135164e-17	3.699599e-13	1.422923e-14
27	7941382	7911559	NM_017971	MRPL20	0.710199	2.183486e-17	3.783327e-13	1.401232e-14
28	7941382	8039939	NM_017971	MRPL20	0.710199	2.183486e-17	3.783327e-13	1.351188e-14
29	7941382	8143781	NM_024711	GIMAP6	0.705623	4.288985e-17	7.431524e-13	2.562594e-14
30	7941382	8073645	NM_015380	SAMM50	0.705531	4.346861e-17	7.531806e-13	2.510602e-14
31	7941382	8132539	NM_014063	DBNL	0.704827	4.816663e-17	8.345833e-13	2.692204e-14
32	7941382	8149638	NM_003974	DOK2	0.702829	6.436046e-17	1.115174e-12	3.484918e-14
33	7941382	7948744	NM_198335	GANAB	0.701403	7.903092e-17	1.369369e-12	4.149602e-14
34	7941382	8104166	NM_004168	SDHA	0.699954	9.724830e-17	1.685021e-12	4.955945e-14
35	7941382	8136849	NM_001143679	GSTK1	0.698927	1.125723e-16	1.950541e-12	5.572974e-14
36	7941382	7990151	NM_182470	PKM2	0.698114	1.263188e-16	2.188727e-12	6.079796e-14
37	7941382	8006392	NM_002815	PSMD11	0.696652	1.553048e-16	2.690966e-12	7.272881e-14
38	7941382	7969559	ENST00000393073		0.694843	2.001638e-16	3.468238e-12	9.126943e-14
39	7941382	7912670	NM_006004	UQCRH	0.693748	2.331945e-16	4.040561e-12	1.036041e-13
40	7941382	8145854	NM_007198	PROSC	0.693454	2.429056e-16	4.208826e-12	1.052207e-13
41	7941382	8016099	NM_004247	EFTUD2	0.692952	2.604288e-16	4.512450e-12	1.100597e-13
42	7941382	7964466	NM_006400	DCTN2	0.689844	3.997297e-16	6.926117e-12	1.649076e-13
43	7941382	8062174	NM_198398	ERGIC3	0.688281	4.948342e-16	8.573993e-12	1.993952e-13
44	7941382	8030881	NM_014225	PPP2R1A	0.688150	5.036971e-16	8.727560e-12	1.983536e-13
45	7941382	8019046	NM_014740	EIF4A3	0.687691	5.361562e-16	9.289979e-12	2.064440e-13
46	7941382	8099340	NM_017491	WDR1	0.687579	5.443066e-16	9.431200e-12	2.050261e-13
47	7941382	8030437	NM_198319	PRMT1	0.686517	6.285588e-16	1.089104e-11	2.317242e-13
48	7941382	8064218	NM_012469	PRPF6	0.685374	7.332671e-16	1.270532e-11	2.646942e-13
49	7941382	7920903	NM_003145	SSR2	0.682789	1.036336e-15	1.795660e-11	3.664612e-13
50	7941382	7941511	NM_006842	SF3B2	0.682705	1.048019e-15	1.815903e-11	3.631807e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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