[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 13907.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
13907	8004247	NM_001142798	C17orf49		chromosome 17 open reading frame 49

Fetching correlation data, please wait...
Getting list of correlations for id 13907.
Getting list of p-values for id 13907.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.146 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8004247	8141295	NM_004889	ATP5J2	0.820695	8.720816e-27	1.511056e-22	1.511056e-22
2	8004247	7913256	NM_005216	DDOST	0.804605	4.703333e-25	8.149465e-21	4.074733e-21
3	8004247	8073192	NM_006003	UQCRFS1	0.801126	1.061070e-24	1.838515e-20	6.128384e-21
4	8004247	8040908	NM_014748	SNX17	0.798597	1.898206e-24	3.289022e-20	8.222554e-21
5	8004247	7916590	NM_001625	AK2	0.796648	2.954559e-24	5.119364e-20	1.023873e-20
6	8004247	8027621	NM_000175	GPI	0.774169	3.515653e-22	6.091572e-18	1.015262e-18
7	8004247	8035553	NM_007263	COPE	0.773761	3.814313e-22	6.609061e-18	9.441515e-19
8	8004247	8110803	NM_030782	CLPTM1L	0.762924	3.139138e-21	5.439185e-17	6.798982e-18
9	8004247	8028104	NM_014266	HCST	0.760436	5.013172e-21	8.686324e-17	9.651471e-18
10	8004247	8136849	NM_001143679	GSTK1	0.753715	1.726251e-20	2.991075e-16	2.991075e-17
11	8004247	7941382	NM_182710	KAT5	0.751610	2.522359e-20	4.370492e-16	3.973174e-17
12	8004247	7949075	NM_016404	TRMT112	0.750144	3.277229e-20	5.678455e-16	4.732046e-17
13	8004247	8119648	NM_057161	KLHDC3	0.745715	7.149994e-20	1.238879e-15	9.529842e-17
14	8004247	8075924	NM_002405	MFNG	0.744346	9.070721e-20	1.571684e-15	1.122631e-16
15	8004247	8052925	NM_144582	TEX261	0.737193	3.068642e-19	5.317036e-15	3.544691e-16
16	8004247	7915504	NM_022821	ELOVL1	0.731840	7.447211e-19	1.290378e-14	8.064865e-16
17	8004247	8072687	NM_006739	MCM5	0.726702	1.709921e-18	2.962780e-14	1.742812e-15
18	8004247	8126474	NM_014623	MEA1	0.725422	2.097125e-18	3.633689e-14	2.018716e-15
19	8004247	8076465	NM_032311	POLDIP3	0.722375	3.393621e-18	5.880128e-14	3.094804e-15
20	8004247	8030881	NM_014225	PPP2R1A	0.721482	3.903566e-18	6.763710e-14	3.381855e-15
21	8004247	7914834	NM_002794	PSMB2	0.720211	4.758935e-18	8.245806e-14	3.926574e-15
22	8004247	7900576	NM_006347	PPIH	0.719443	5.360862e-18	9.288766e-14	4.222166e-15
23	8004247	8064522	NM_174856	IDH3B	0.718957	5.779757e-18	1.001459e-13	4.354168e-15
24	8004247	7914563	NM_003680	YARS	0.713046	1.425246e-17	2.469524e-13	1.028968e-14
25	8004247	7998033	NM_014972	TCF25	0.712469	1.554460e-17	2.693413e-13	1.077365e-14
26	8004247	8053214	NM_181575	AUP1	0.711128	1.900751e-17	3.293431e-13	1.266704e-14
27	8004247	8110166	NM_138820	HIGD2A	0.710693	2.028386e-17	3.514585e-13	1.301698e-14
28	8004247	7919950	NM_002651	PI4KB	0.708615	2.762504e-17	4.786591e-13	1.709497e-14
29	8004247	8080438	NM_014041	SPCS1	0.708546	2.790827e-17	4.835667e-13	1.667471e-14
30	8004247	7920903	NM_003145	SSR2	0.706870	3.572675e-17	6.190373e-13	2.063458e-14
31	8004247	8133690	NM_005918	MDH2	0.706214	3.933448e-17	6.815485e-13	2.198544e-14
32	8004247	7941936	NM_000852	GSTP1	0.703580	5.773133e-17	1.000311e-12	3.125971e-14
33	8004247	8011747	NM_003562	SLC25A11	0.702903	6.367612e-17	1.103316e-12	3.343382e-14
34	8004247	7936028	NM_005736	ACTR1A	0.702743	6.516177e-17	1.129058e-12	3.320759e-14
35	8004247	7950473	NM_004041	ARRB1	0.700317	9.233006e-17	1.599803e-12	4.570865e-14
36	8004247	8033899	NM_003755	EIF3G	0.699854	9.863949e-17	1.709126e-12	4.747573e-14
37	8004247	8133434	NM_022170	EIF4H	0.697372	1.403098e-16	2.431148e-12	6.570669e-14
38	8004247	7990151	NM_182470	PKM2	0.696622	1.559450e-16	2.702058e-12	7.110680e-14
39	8004247	8030007	NM_001425	EMP3	0.696547	1.576110e-16	2.730925e-12	7.002373e-14
40	8004247	8004497	NM_001416	EIF4A1	0.695655	1.786391e-16	3.095279e-12	7.738198e-14
41	8004247	7978208	NM_012461	TINF2	0.695087	1.934382e-16	3.351704e-12	8.174887e-14
42	8004247	7906133	NM_007221	PMF1	0.694843	2.001532e-16	3.468055e-12	8.257274e-14
43	8004247	8029884	NR_027280	SAE1	0.691689	3.101623e-16	5.374182e-12	1.249810e-13
44	8004247	8028916	NM_004596	SNRPA	0.690090	3.864933e-16	6.696770e-12	1.521993e-13
45	8004247	8062174	NM_198398	ERGIC3	0.687348	5.616468e-16	9.731654e-12	2.162590e-13
46	8004247	8065566	NM_001037500	DEFB124	-0.687206	5.725957e-16	9.921365e-12	2.156818e-13
47	8004247	8126371	NM_001760	CCND3	0.686853	6.006484e-16	1.040743e-11	2.214348e-13
48	8004247	8149638	NM_003974	DOK2	0.686269	6.499388e-16	1.126149e-11	2.346144e-13
49	8004247	7929243	NM_017838	NHP2	0.685303	7.402923e-16	1.282704e-11	2.617764e-13
50	8004247	7905395	NM_002796	PSMB4	0.685078	7.630205e-16	1.322086e-11	2.644171e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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