[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 15278.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
15278	8075924	NM_002405	MFNG		MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase

Fetching correlation data, please wait...
Getting list of correlations for id 15278.
Getting list of p-values for id 15278.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.101 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8075924	7913256	NM_005216	DDOST	0.806404	3.068046e-25	5.316003e-21	5.316003e-21
2	8075924	8110803	NM_030782	CLPTM1L	0.799127	1.681354e-24	2.913282e-20	1.456641e-20
3	8075924	8040908	NM_014748	SNX17	0.788802	1.673013e-23	2.898830e-19	9.662767e-20
4	8075924	8126371	NM_001760	CCND3	0.777423	1.822128e-22	3.157202e-18	7.893005e-19
5	8075924	7948744	NM_198335	GANAB	0.770407	7.414070e-22	1.284636e-17	2.569272e-18
6	8075924	8028104	NM_014266	HCST	0.763917	2.600001e-21	4.505021e-17	7.508369e-18
7	8075924	8011759	NM_005022	PFN1	0.762340	3.505783e-21	6.074470e-17	8.677814e-18
8	8075924	8030881	NM_014225	PPP2R1A	0.760359	5.085480e-21	8.811611e-17	1.101451e-17
9	8075924	8013696	NM_014680	KIAA0100	0.757135	9.247310e-21	1.602281e-16	1.780313e-17
10	8075924	8119648	NM_057161	KLHDC3	0.755526	1.241998e-20	2.152010e-16	2.152010e-17
11	8075924	8015655	NM_178126	FAM134C	0.755103	1.341553e-20	2.324509e-16	2.113190e-17
12	8075924	7998033	NM_014972	TCF25	0.746827	5.886826e-20	1.020010e-15	8.500085e-17
13	8075924	8004247	NM_001142798	C17orf49	0.744346	9.070721e-20	1.571684e-15	1.208988e-16
14	8075924	8133434	NM_022170	EIF4H	0.741607	1.453278e-19	2.518095e-15	1.798639e-16
15	8075924	8032137	NM_001033026	C19orf6	0.741473	1.487054e-19	2.576618e-15	1.717745e-16
16	8075924	7904974	NR_003242	C1orf152	0.740727	1.688989e-19	2.926511e-15	1.829069e-16
17	8075924	7956166	NM_015292	ESYT1	0.740323	1.809073e-19	3.134582e-15	1.843872e-16
18	8075924	8002266	NM_001039690	CHTF8	0.740024	1.903465e-19	3.298133e-15	1.832296e-16
19	8075924	8110166	NM_138820	HIGD2A	0.739152	2.206600e-19	3.823375e-15	2.012303e-16
20	8075924	8066697	NM_173179	SLC35C2	0.738304	2.546037e-19	4.411519e-15	2.205759e-16
21	8075924	7990151	NM_182470	PKM2	0.738046	2.659295e-19	4.607761e-15	2.194172e-16
22	8075924	8024170	NM_012292	HMHA1	0.733090	6.066042e-19	1.051063e-14	4.777560e-16
23	8075924	8064522	NM_174856	IDH3B	0.729765	1.044145e-18	1.809189e-14	7.866040e-16
24	8075924	8053214	NM_181575	AUP1	0.728910	1.198984e-18	2.077479e-14	8.656162e-16
25	8075924	8138773	NM_022170	EIF4H	0.728479	1.285420e-18	2.227248e-14	8.908991e-16
26	8075924	8011516	NM_174954	ATP2A3	0.726037	1.901497e-18	3.294724e-14	1.267202e-15
27	8075924	7994506	NM_032815	NFATC2IP	0.724226	2.535090e-18	4.392551e-14	1.626871e-15
28	8075924	8032730	NM_001961	EEF2	0.723635	2.783429e-18	4.822848e-14	1.722446e-15
29	8075924	8052925	NM_144582	TEX261	0.723240	2.962365e-18	5.132889e-14	1.769962e-15
30	8075924	8030007	NM_001425	EMP3	0.722717	3.216128e-18	5.572585e-14	1.857528e-15
31	8075924	7916590	NM_001625	AK2	0.721880	3.667468e-18	6.354621e-14	2.049878e-15
32	8075924	7915504	NM_022821	ELOVL1	0.721391	3.959236e-18	6.860169e-14	2.143803e-15
33	8075924	7937802	NM_004356	CD81	0.719393	5.402617e-18	9.361115e-14	2.836701e-15
34	8075924	8027621	NM_000175	GPI	0.716842	8.004458e-18	1.386932e-13	4.079213e-15
35	8075924	8073192	NM_006003	UQCRFS1	0.716777	8.084314e-18	1.400769e-13	4.002198e-15
36	8075924	7990211	NM_000520	HEXA	0.715743	9.467684e-18	1.640466e-13	4.556849e-15
37	8075924	8069057	NR_024108	PFKL	0.715738	9.475094e-18	1.641750e-13	4.437161e-15
38	8075924	7940372	NM_024092	TMEM109	0.715019	1.057117e-17	1.831666e-13	4.820174e-15
39	8075924	8026272	NM_004843	IL27RA	0.713612	1.308550e-17	2.267325e-13	5.813654e-15
40	8075924	7945275	NM_052875	VPS26B	0.708753	2.706487e-17	4.689529e-13	1.172382e-14
41	8075924	7904969	NM_030796	VOPP1	0.708544	2.791459e-17	4.836762e-13	1.179698e-14
42	8075924	8079693	NM_018031	WDR6	0.706699	3.663846e-17	6.348347e-13	1.511511e-14
43	8075924	8164644	NM_033387	FAM78A	0.703693	5.679908e-17	9.841577e-13	2.288739e-14
44	8075924	8077550	NM_001077525	MTMR14	0.703513	5.829570e-17	1.010090e-12	2.295658e-14
45	8075924	7963614	NM_000889	ITGB7	0.702419	6.828180e-17	1.183119e-12	2.629153e-14
46	8075924	8179019	NM_018950	HLA-F	0.702300	6.946811e-17	1.203674e-12	2.616683e-14
47	8075924	7978208	NM_012461	TINF2	0.700782	8.639634e-17	1.496989e-12	3.185084e-14
48	8075924	8026548	NM_001130524	AP1M1	0.700562	8.915675e-17	1.544819e-12	3.218373e-14
49	8075924	8177717	NM_018950	HLA-F	0.699233	1.077754e-16	1.867424e-12	3.811069e-14
50	8075924	8004030	NM_015528	RNF167	0.697796	1.321420e-16	2.289624e-12	4.579248e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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