[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
15767	7937802	NM_004356	CD81		CD81 molecule

Fetching correlation data, please wait...
Getting list of correlations for id 15767.
Getting list of p-values for id 15767.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.144 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7937802	8043725	NM_001079	ZAP70	0.804040	5.373889e-25	9.311338e-21	9.311338e-21
2	7937802	8164644	NM_033387	FAM78A	0.764329	2.403936e-21	4.165300e-17	2.082650e-17
3	7937802	7963614	NM_000889	ITGB7	0.762675	3.290658e-21	5.701723e-17	1.900574e-17
4	7937802	8032576	NM_198969	AES	0.756703	1.001259e-20	1.734881e-16	4.337203e-17
5	7937802	7904974	NR_003242	C1orf152	0.746085	6.702610e-20	1.161361e-15	2.322722e-16
6	7937802	8139712	NM_030796	VOPP1	0.744659	8.591090e-20	1.488578e-15	2.480964e-16
7	7937802	7904969	NM_030796	VOPP1	0.742170	1.319845e-19	2.286895e-15	3.266993e-16
8	7937802	8011759	NM_005022	PFN1	0.740547	1.741515e-19	3.017523e-15	3.771903e-16
9	7937802	7972946	NM_007368	RASA3	0.738622	2.412991e-19	4.180990e-15	4.645545e-16
10	7937802	8005171	NM_016113	TRPV2	0.737023	3.157514e-19	5.471025e-15	5.471025e-16
11	7937802	7948696	NM_004739	MTA2	0.736868	3.240300e-19	5.614468e-15	5.104062e-16
12	7937802	7912257	NM_001009566	CLSTN1	0.734732	4.624895e-19	8.013556e-15	6.677963e-16
13	7937802	7967202	NM_019034	RHOF	0.733707	5.479381e-19	9.494123e-15	7.303172e-16
14	7937802	7992828	NM_001012631	IL32	0.732920	6.237990e-19	1.080857e-14	7.720404e-16
15	7937802	8110803	NM_030782	CLPTM1L	0.732628	6.544263e-19	1.133925e-14	7.559497e-16
16	7937802	8085431	NM_024923	NUP210	0.727851	1.422215e-18	2.464272e-14	1.540170e-15
17	7937802	8038809	NM_005601	NKG7	0.727667	1.464775e-18	2.538016e-14	1.492950e-15
18	7937802	7994603	NM_001030288	SPN	0.721164	4.101915e-18	7.107388e-14	3.948549e-15
19	7937802	8075924	NM_002405	MFNG	0.719393	5.402617e-18	9.361115e-14	4.926903e-15
20	7937802	8026106	NM_004343	CALR	0.718174	6.522700e-18	1.130188e-13	5.650941e-15
21	7937802	8115234	NM_001155	ANXA6	0.717682	7.035278e-18	1.219003e-13	5.804774e-15
22	7937802	7944152	NM_001558	IL10RA	0.715676	9.566228e-18	1.657540e-13	7.534274e-15
23	7937802	8019263	NM_004309	ARHGDIA	0.714911	1.074618e-17	1.861991e-13	8.095615e-15
24	7937802	7980773	NM_001080414	CCDC88C	0.714709	1.108206e-17	1.920188e-13	8.000785e-15
25	7937802	8009685	NM_004252	SLC9A3R1	0.709285	2.501278e-17	4.333965e-13	1.733586e-14
26	7937802	8027621	NM_000175	GPI	0.705822	4.165889e-17	7.218235e-13	2.776244e-14
27	7937802	7940372	NM_024092	TMEM109	0.705228	4.543435e-17	7.872409e-13	2.915707e-14
28	7937802	7941136	NM_013265	C11orf2	0.705209	4.556257e-17	7.894627e-13	2.819509e-14
29	7937802	7991374	NM_002168	IDH2	0.705114	4.619794e-17	8.004717e-13	2.760247e-14
30	7937802	7909967	NM_001748	CAPN2	0.702527	6.722646e-17	1.164833e-12	3.882776e-14
31	7937802	8076137	NM_015374	SUN2	0.702070	7.180720e-17	1.244203e-12	4.013559e-14
32	7937802	8053890	NM_020151	STARD7	0.701275	8.049773e-17	1.394784e-12	4.358701e-14
33	7937802	8012257	NM_000546	TP53	0.699128	1.093886e-16	1.895377e-12	5.743566e-14
34	7937802	8177003	NM_001636	SLC25A6	0.698889	1.131707e-16	1.960908e-12	5.767376e-14
35	7937802	8171111	NM_001636	SLC25A6	0.698889	1.131707e-16	1.960908e-12	5.602594e-14
36	7937802	8139433	NM_033054	MYO1G	0.698296	1.231178e-16	2.133262e-12	5.925727e-14
37	7937802	7948192	NM_003146	SSRP1	0.694479	2.105970e-16	3.649015e-12	9.862203e-14
38	7937802	7913256	NM_005216	DDOST	0.693935	2.271972e-16	3.936645e-12	1.035959e-13
39	7937802	8108080	NM_015288	PHF15	0.689466	4.209479e-16	7.293764e-12	1.870196e-13
40	7937802	8084439	NM_182917	EIF4G1	0.687619	5.413850e-16	9.380577e-12	2.345144e-13
41	7937802	8036525	NM_001042600	MAP4K1	0.686523	6.280683e-16	1.088254e-11	2.654278e-13
42	7937802	8062557	NM_015568	PPP1R16B	0.686098	6.651216e-16	1.152456e-11	2.743943e-13
43	7937802	8015655	NM_178126	FAM134C	0.684998	7.712509e-16	1.336346e-11	3.107782e-13
44	7937802	7949792	NM_005608	PTPRCAP	0.684177	8.610778e-16	1.491990e-11	3.390885e-13
45	7937802	7945275	NM_052875	VPS26B	0.681810	1.180364e-15	2.045217e-11	4.544928e-13
46	7937802	8051814	NM_006887	ZFP36L2	0.680752	1.357799e-15	2.352658e-11	5.114473e-13
47	7937802	7928395	NM_173540	FUT11	0.679747	1.550214e-15	2.686055e-11	5.715011e-13
48	7937802	8123609	NM_004155	SERPINB9	0.679342	1.634993e-15	2.832952e-11	5.901984e-13
49	7937802	7994506	NM_032815	NFATC2IP	0.677913	1.971486e-15	3.415994e-11	6.971416e-13
50	7937802	8032137	NM_001033026	C19orf6	0.676739	2.297553e-15	3.980969e-11	7.961939e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation