[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16212	8009685	NM_004252	SLC9A3R1		solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1

Fetching correlation data, please wait...
Getting list of correlations for id 16212.
Getting list of p-values for id 16212.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.133 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8009685	7920515	NM_017582	UBE2Q1	0.750180	3.256432e-20	5.642421e-16	5.642421e-16
2	8009685	8110841	NM_024830	LPCAT1	0.744499	8.832715e-20	1.530444e-15	7.652222e-16
3	8009685	8011759	NM_005022	PFN1	0.731507	7.864129e-19	1.362618e-14	4.542059e-15
4	8009685	8176026	NM_001456	FLNA	0.723694	2.757759e-18	4.778370e-14	1.194592e-14
5	8009685	8139433	NM_033054	MYO1G	0.721108	4.138176e-18	7.170218e-14	1.434044e-14
6	8009685	7909236	NM_004759	MAPKAPK2	0.716212	8.814418e-18	1.527274e-13	2.545457e-14
7	8009685	7949264	NM_006795	EHD1	0.715889	9.260410e-18	1.604551e-13	2.292216e-14
8	8009685	8019250	NM_000918	P4HB	0.714239	1.189976e-17	2.061872e-13	2.577340e-14
9	8009685	7994826	NM_002209	ITGAL	0.710580	2.063098e-17	3.574730e-13	3.971923e-14
10	8009685	7937802	NM_004356	CD81	0.709285	2.501278e-17	4.333965e-13	4.333965e-14
11	8009685	8003773	NM_015085	RAP1GAP2	0.706363	3.848908e-17	6.669003e-13	6.062730e-14
12	8009685	8066716	NM_133171	ELMO2	0.704708	4.901016e-17	8.491991e-13	7.076659e-14
13	8009685	8084439	NM_182917	EIF4G1	0.704623	4.962232e-17	8.598060e-13	6.613892e-14
14	8009685	7945275	NM_052875	VPS26B	0.702119	7.129867e-17	1.235392e-12	8.824229e-14
15	8009685	7904974	NR_003242	C1orf152	0.700656	8.796368e-17	1.524147e-12	1.016098e-13
16	8009685	8068974	NM_003274	TRAPPC10	0.700421	9.096711e-17	1.576187e-12	9.851169e-14
17	8009685	8132592	NM_002541	OGDH	0.698758	1.153050e-16	1.997890e-12	1.175230e-13
18	8009685	7968890	NM_003646	DGKZ	0.698029	1.278504e-16	2.215264e-12	1.230702e-13
19	8009685	8064336	NM_144628	TBC1D20	0.696697	1.543145e-16	2.673807e-12	1.407267e-13
20	8009685	8037005	NM_000660	TGFB1	0.693846	2.300109e-16	3.985399e-12	1.992699e-13
21	8009685	7994603	NM_001030288	SPN	0.692929	2.612887e-16	4.527350e-12	2.155881e-13
22	8009685	8026106	NM_004343	CALR	0.687844	5.250792e-16	9.098047e-12	4.135476e-13
23	8009685	8024358	NM_001319	CSNK1G2	0.684646	8.085880e-16	1.401040e-11	6.091480e-13
24	8009685	8163569	NM_030767	AKNA	0.684267	8.507877e-16	1.474160e-11	6.142332e-13
25	8009685	7904969	NM_030796	VOPP1	0.678839	1.746621e-15	3.026370e-11	1.210548e-12
26	8009685	8009164	NM_005828	DCAF7	0.677747	2.014798e-15	3.491040e-11	1.342708e-12
27	8009685	7925851	NM_014023	WDR37	0.676760	2.291215e-15	3.969988e-11	1.470366e-12
28	8009685	8170891	NM_001493	GDI1	0.675401	2.732764e-15	4.735060e-11	1.691093e-12
29	8009685	8115783	NM_005990	STK10	0.673640	3.428886e-15	5.941231e-11	2.048701e-12
30	8009685	8040753	NM_017727	TMEM214	0.672576	3.930257e-15	6.809957e-11	2.269986e-12
31	8009685	7906235	NM_005973	PRCC	0.671120	4.732667e-15	8.200292e-11	2.645256e-12
32	8009685	7935968	NM_003893	LDB1	0.670940	4.842211e-15	8.390099e-11	2.621906e-12
33	8009685	8110803	NM_030782	CLPTM1L	0.669680	5.680571e-15	9.842725e-11	2.982644e-12
34	8009685	7936884	NM_014661	FAM53B	0.668935	6.241290e-15	1.081428e-10	3.180672e-12
35	8009685	8011516	NM_174954	ATP2A3	0.668885	6.281122e-15	1.088330e-10	3.109514e-12
36	8009685	8013486	NM_015276	USP22	0.667521	7.456137e-15	1.291925e-10	3.588680e-12
37	8009685	8051814	NM_006887	ZFP36L2	0.666904	8.056014e-15	1.395866e-10	3.772610e-12
38	8009685	8164644	NM_033387	FAM78A	0.666250	8.742070e-15	1.514738e-10	3.986154e-12
39	8009685	8123062	NM_020823	TMEM181	0.664764	1.051841e-14	1.822525e-10	4.673140e-12
40	8009685	7972946	NM_007368	RASA3	0.664724	1.057092e-14	1.831624e-10	4.579060e-12
41	8009685	7952557	NM_003139	SRPR	0.663491	1.231427e-14	2.133694e-10	5.204131e-12
42	8009685	8016266	NM_015443	KIAA1267	0.663485	1.232262e-14	2.135141e-10	5.083669e-12
43	8009685	8150036	NM_015254	KIF13B	0.661519	1.569637e-14	2.719709e-10	6.324906e-12
44	8009685	8167165	NM_001654	ARAF	0.661114	1.649528e-14	2.858138e-10	6.495767e-12
45	8009685	7948696	NM_004739	MTA2	0.660943	1.684447e-14	2.918642e-10	6.485870e-12
46	8009685	8062557	NM_015568	PPP1R16B	0.660641	1.747767e-14	3.028356e-10	6.583383e-12
47	8009685	7909967	NM_001748	CAPN2	0.659177	2.088968e-14	3.619555e-10	7.701181e-12
48	8009685	7928395	NM_173540	FUT11	0.658578	2.246579e-14	3.892648e-10	8.109683e-12
49	8009685	7913883	NM_000437	PAFAH2	0.658502	2.267503e-14	3.928902e-10	8.018167e-12
50	8009685	8013696	NM_014680	KIAA0100	0.658465	2.277639e-14	3.946464e-10	7.892929e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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