[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
14064	8013486	NM_015276	USP22		ubiquitin specific peptidase 22

Fetching correlation data, please wait...
Getting list of correlations for id 14064.
Getting list of p-values for id 14064.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.147 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8013486	7935968	NM_003893	LDB1	0.826423	1.912912e-27	3.314502e-23	3.314502e-23
2	8013486	8170891	NM_001493	GDI1	0.773842	3.753019e-22	6.502856e-18	3.251428e-18
3	8013486	8010983	NM_021962	ABR	0.771852	5.575706e-22	9.661026e-18	3.220342e-18
4	8013486	8049317	NM_152879	DGKD	0.770466	7.329419e-22	1.269968e-17	3.174921e-18
5	8013486	7941537	NM_018026	PACS1	0.769318	9.177896e-22	1.590254e-17	3.180508e-18
6	8013486	8016266	NM_015443	KIAA1267	0.766838	1.485680e-21	2.574238e-17	4.290397e-18
7	8013486	8084439	NM_182917	EIF4G1	0.763702	2.708231e-21	4.692552e-17	6.703646e-18
8	8013486	8024358	NM_001319	CSNK1G2	0.763499	2.814823e-21	4.877243e-17	6.096554e-18
9	8013486	7953569	NM_080549	PTPN6	0.761027	4.487303e-21	7.775150e-17	8.639055e-18
10	8013486	8079950	NM_002070	GNAI2	0.758900	6.673998e-21	1.156404e-16	1.156404e-17
11	8013486	7904974	NR_003242	C1orf152	0.756778	9.875407e-21	1.711112e-16	1.555556e-17
12	8013486	7919950	NM_002651	PI4KB	0.756580	1.024022e-20	1.774323e-16	1.478602e-17
13	8013486	8037005	NM_000660	TGFB1	0.754669	1.451816e-20	2.515561e-16	1.935047e-17
14	8013486	8019263	NM_004309	ARHGDIA	0.750092	3.307557e-20	5.731004e-16	4.093574e-17
15	8013486	8076465	NM_032311	POLDIP3	0.749328	3.788062e-20	6.563575e-16	4.375717e-17
16	8013486	8158783	NM_005085	NUP214	0.748010	4.782247e-20	8.286199e-16	5.178875e-17
17	8013486	8034762	NM_002730	PRKACA	0.747998	4.792234e-20	8.303503e-16	4.884414e-17
18	8013486	8029029	NM_007040	HNRNPUL1	0.746804	5.910793e-20	1.024163e-15	5.689795e-17
19	8013486	8115783	NM_005990	STK10	0.745380	7.579017e-20	1.313216e-15	6.911665e-17
20	8013486	7934733	NM_145869	ANXA11	0.745244	7.761490e-20	1.344833e-15	6.724167e-17
21	8013486	7920515	NM_017582	UBE2Q1	0.744662	8.586341e-20	1.487755e-15	7.084549e-17
22	8013486	8018324	NM_138619	GGA3	0.743809	9.953740e-20	1.724685e-15	7.839475e-17
23	8013486	8065612	NM_080616	C20orf112	0.740543	1.742511e-19	3.019248e-15	1.312717e-16
24	8013486	7966929	NM_006861	RAB35	0.739600	2.045317e-19	3.543920e-15	1.476633e-16
25	8013486	7952557	NM_003139	SRPR	0.739484	2.085916e-19	3.614267e-15	1.445707e-16
26	8013486	7948574	NM_024811	CPSF7	0.739474	2.089491e-19	3.620462e-15	1.392485e-16
27	8013486	8132819	NM_006060	IKZF1	0.739436	2.102917e-19	3.643725e-15	1.349528e-16
28	8013486	7930031	NM_004193	GBF1	0.738854	2.320400e-19	4.020557e-15	1.435913e-16
29	8013486	8013696	NM_014680	KIAA0100	0.738779	2.350211e-19	4.072211e-15	1.404211e-16
30	8013486	7998033	NM_014972	TCF25	0.734315	4.955764e-19	8.586853e-15	2.862284e-16
31	8013486	8133275	NM_172020	POM121	0.733926	5.284611e-19	9.156645e-15	2.953756e-16
32	8013486	7941511	NM_006842	SF3B2	0.733235	5.923015e-19	1.026281e-14	3.207127e-16
33	8013486	8012376	NM_014232	VAMP2	0.733025	6.131365e-19	1.062382e-14	3.219338e-16
34	8013486	8075343	NM_005877	SF3A1	0.731309	8.122219e-19	1.407337e-14	4.139226e-16
35	8013486	8004030	NM_015528	RNF167	0.730778	8.855997e-19	1.534479e-14	4.384225e-16
36	8013486	7998825	NM_002613	PDPK1	0.728990	1.183585e-18	2.050797e-14	5.696659e-16
37	8013486	7912412	NM_004958	MTOR	0.727945	1.400904e-18	2.427346e-14	6.560395e-16
38	8013486	8008139	NM_023079	UBE2Z	0.727778	1.439004e-18	2.493363e-14	6.561482e-16
39	8013486	8026548	NM_001130524	AP1M1	0.727666	1.465059e-18	2.538508e-14	6.508996e-16
40	8013486	8032418	NM_003938	AP3D1	0.726465	1.775931e-18	3.077155e-14	7.692888e-16
41	8013486	7949465	NM_021975	RELA	0.725534	2.060184e-18	3.569681e-14	8.706540e-16
42	8013486	8005903	NM_003170	SUPT6H	0.725027	2.232951e-18	3.869034e-14	9.211986e-16
43	8013486	8140297	NM_001099415	POM121C	0.724719	2.344638e-18	4.062554e-14	9.447800e-16
44	8013486	8026638	NM_004145	MYO9B	0.724346	2.487473e-18	4.310044e-14	9.795556e-16
45	8013486	8031913	NM_005762	TRIM28	0.723800	2.711854e-18	4.698830e-14	1.044185e-15
46	8013486	7947681	NM_004308	ARHGAP1	0.723522	2.833384e-18	4.909404e-14	1.067262e-15
47	8013486	7948192	NM_003146	SSRP1	0.723246	2.959430e-18	5.127804e-14	1.091022e-15
48	8013486	8173009	NM_015107	PHF8	0.721366	3.974902e-18	6.887312e-14	1.434857e-15
49	8013486	7949264	NM_006795	EHD1	0.720701	4.409184e-18	7.639793e-14	1.559141e-15
50	8013486	8133326	NM_172020	POM121	0.719114	5.640973e-18	9.774114e-14	1.954823e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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