[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 6 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
3058	7998820	AK293900	PDPK1		3-phosphoinositide dependent protein kinase-1
3107	7992682	AK293900	PDPK1		3-phosphoinositide dependent protein kinase-1
6111	7998823	NM_002613	PDPK1		3-phosphoinositide dependent protein kinase-1
6112	7998841	NM_002613	PDPK1		3-phosphoinositide dependent protein kinase-1
13280	7992670	NM_002613	PDPK1		3-phosphoinositide dependent protein kinase-1
15308	7998825	NM_002613	PDPK1		3-phosphoinositide dependent protein kinase-1

Fetching correlation data, please wait...
Getting list of correlations for id 3058.
Getting list of p-values for id 3058.
1 of 6 done.
Getting list of correlations for id 3107.
Getting list of p-values for id 3107.
2 of 6 done.
Getting list of correlations for id 6111.
Getting list of p-values for id 6111.
3 of 6 done.
Getting list of correlations for id 6112.
Getting list of p-values for id 6112.
4 of 6 done.
Getting list of correlations for id 13280.
Getting list of p-values for id 13280.
5 of 6 done.
Getting list of correlations for id 15308.
Getting list of p-values for id 15308.
6 of 6 done.
Calculating corrections for multiple testing (n=103962), please wait...
Done; whole program took 0.404 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7998841	7998823	NM_002613	PDPK1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7998823	7998841	NM_002613	PDPK1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	7992682	7998820	AK293900	PDPK1	0.956149	9.604132e-57	9.984648e-52	3.328216e-52
4	7998820	7992682	AK293900	PDPK1	0.956149	9.604132e-57	9.984648e-52	2.496162e-52
5	7998825	7999044	NM_004380	CREBBP	0.791039	1.028278e-23	1.069018e-18	2.138036e-19
6	7998825	7980189	NM_001039479	KIAA0317	0.783741	4.925627e-23	5.120780e-18	8.534633e-19
7	7998825	7934733	NM_145869	ANXA11	0.779076	1.299499e-22	1.350986e-17	1.929979e-18
8	7998825	8011542	NM_015113	ZZEF1	0.778537	1.451481e-22	1.508989e-17	1.886236e-18
9	7998825	8078091	NM_003298	NR2C2	0.777190	1.910766e-22	1.986470e-17	2.207189e-18
10	7998825	8156321	NM_003177	SYK	0.776642	2.135721e-22	2.220338e-17	2.220338e-18
11	7998825	8115783	NM_005990	STK10	0.766647	1.541275e-21	1.602341e-16	1.456673e-17
12	7992670	8074791	NM_002745	MAPK1	0.765124	2.065395e-21	2.147226e-16	1.789355e-17
13	7998825	8073345	NM_001429	EP300	0.762714	3.266346e-21	3.395758e-16	2.612122e-17
14	7992670	7950578	NM_001128620	PAK1	0.760583	4.876692e-21	5.069907e-16	3.621362e-17
15	7998825	8160637	NM_001497	B4GALT1	0.758366	7.367902e-21	7.659819e-16	5.106546e-17
16	7992670	7944493	NM_005188	CBL	0.758312	7.441505e-21	7.736337e-16	4.835211e-17
17	7998825	8079950	NM_002070	GNAI2	0.758247	7.531711e-21	7.830117e-16	4.605951e-17
18	7998825	8158783	NM_005085	NUP214	0.756724	9.973004e-21	1.036813e-15	5.760075e-17
19	7992670	8166511	NM_005391	PDK3	0.755335	1.285979e-20	1.336930e-15	7.036473e-17
20	7998825	7916747	NM_002227	JAK1	0.755111	1.339633e-20	1.392709e-15	6.963545e-17
21	7998825	8026638	NM_004145	MYO9B	0.754873	1.398901e-20	1.454325e-15	6.925357e-17
22	7992670	7941769	NM_012308	KDM2A	0.753883	1.674450e-20	1.740792e-15	7.912691e-17
23	7992670	7940798	NM_017490	MARK2	0.752112	2.304817e-20	2.396134e-15	1.041797e-16
24	7998825	8108330	NM_016604	KDM3B	0.751765	2.453133e-20	2.550326e-15	1.062636e-16
25	7992670	8094574	NM_015173	TBC1D1	0.747941	4.840227e-20	5.031997e-15	2.012799e-16
26	7992670	8072279	NM_153050	MTMR3	0.747839	4.928169e-20	5.123423e-15	1.970547e-16
27	7998825	8005903	NM_003170	SUPT6H	0.747041	5.669919e-20	5.894561e-15	2.183171e-16
28	7992670	7945902	NM_016320	NUP98	0.746696	6.023397e-20	6.262044e-15	2.236444e-16
29	7998825	7953569	NM_080549	PTPN6	0.744627	8.639015e-20	8.981293e-15	3.096998e-16
30	7992670	7905444	NM_030918	SNX27	0.743094	1.126002e-19	1.170615e-14	3.902049e-16
31	7998825	8145954	NM_006283	TACC1	0.742581	1.229893e-19	1.278621e-14	4.124584e-16
32	7992670	7985809	NM_007011	ABHD2	0.741899	1.382565e-19	1.437342e-14	4.491695e-16
33	7998825	7977003	NM_015156	RCOR1	0.741813	1.402914e-19	1.458497e-14	4.419688e-16
34	7998825	7952557	NM_003139	SRPR	0.741564	1.463937e-19	1.521938e-14	4.476288e-16
35	7992670	8151254	NM_006540	NCOA2	0.741405	1.504361e-19	1.563964e-14	4.468469e-16
36	7992670	8124059	NM_005124	NUP153	0.741215	1.554097e-19	1.615670e-14	4.487973e-16
37	7992670	8015607	NM_139276	STAT3	0.739509	2.077119e-19	2.159415e-14	5.836256e-16
38	7992670	7904137	NM_198268	HIPK1	0.739499	2.080685e-19	2.163122e-14	5.692426e-16
39	7998825	7940798	NM_017490	MARK2	0.739479	2.087588e-19	2.170298e-14	5.564868e-16
40	7992670	8171684	NM_031892	SH3KBP1	0.738727	2.370729e-19	2.464658e-14	6.161644e-16
41	7992670	8158597	NM_001136557	GPR107	0.738158	2.609538e-19	2.712928e-14	6.616897e-16
42	7992670	8040552	NM_147223	NCOA1	0.737025	3.156528e-19	3.281589e-14	7.813308e-16
43	7992670	7970162	NM_015205	ATP11A	0.737017	3.160579e-19	3.285802e-14	7.641399e-16
44	7992670	7977803	NM_001077351	RBM23	0.735295	4.212204e-19	4.379092e-14	9.952482e-16
45	7998825	8012961	NM_006311	NCOR1	0.734992	4.429939e-19	4.605453e-14	1.023434e-15
46	7992670	7977003	NM_015156	RCOR1	0.734788	4.582471e-19	4.764028e-14	1.035658e-15
47	7998825	8016266	NM_015443	KIAA1267	0.732757	6.407143e-19	6.660994e-14	1.417233e-15
48	7998825	8017019	NM_004687	MTMR4	0.732608	6.566272e-19	6.826428e-14	1.422173e-15
49	7998825	8094574	NM_015173	TBC1D1	0.732529	6.651596e-19	6.915132e-14	1.411251e-15
50	7998825	7985605	NM_014630	ZNF592	0.731595	7.750767e-19	8.057853e-14	1.611571e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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