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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 6112.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
6112 7998841 NM_002613 PDPK1 link to infopage 3-phosphoinositide dependent protein kinase-1

Fetching correlation data, please wait...
Getting list of correlations for id 6112.
Getting list of p-values for id 6112.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.099 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7998841 7998823 NM_002613 PDPK1 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
2 7998841 8025183 NM_020533 MCOLN1 link to infopage -0.565293 3.331226e-10 5.772016e-6 2.886008e-6
3 7998841 8016018 NM_001143780 SLC25A39 link to infopage -0.557891 6.303867e-10 1.092271e-5 3.640903e-6
4 7998841 8032127 NM_138774 C19orf22 link to infopage -0.552286 1.011405e-9 1.752462e-5 4.381154e-6
5 7998841 8119161 NM_002648 PIM1 link to infopage -0.531391 5.467304e-9 9.473197e-5 1.894639e-5
6 7998841 8134631 NM_138494 ZNF655 link to infopage 0.524995 8.959920e-9 1.552485e-4 2.587476e-5
7 7998841 8015991 NM_000342 SLC4A1 link to infopage -0.519390 1.369904e-8 2.373632e-4 3.390903e-5
8 7998841 8150439 NM_020476 ANK1 link to infopage -0.518314 1.485026e-8 2.573104e-4 3.216381e-5
9 7998841 7922689 NM_002065 GLUL link to infopage -0.517641 1.561604e-8 2.705791e-4 3.006434e-5
10 7998841 7921133 NM_004494 HDGF link to infopage -0.515895 1.778343e-8 3.081335e-4 3.081335e-5
11 7998841 7961230 NM_003651 CSDA link to infopage -0.515001 1.900059e-8 3.292232e-4 2.992938e-5
12 7998841 8079796 NM_022064 RNF123 link to infopage -0.514371 1.990672e-8 3.449237e-4 2.874364e-5
13 7998841 7959173 NM_014868 RNF10 link to infopage -0.513847 2.069220e-8 3.585338e-4 2.757952e-5
14 7998841 7911218 NM_015431 TRIM58 link to infopage -0.510786 2.590278e-8 4.488174e-4 3.205839e-5
15 7998841 8073705 NM_181333 PRR5 link to infopage -0.509080 2.932809e-8 5.081678e-4 3.387785e-5
16 7998841 7942697 NM_004055 CAPN5 link to infopage -0.507329 3.329282e-8 5.768646e-4 3.605404e-5
17 7998841 7979615 NM_001024858 SPTB link to infopage -0.504934 3.955134e-8 6.853061e-4 4.031212e-5
18 7998841 8145005 NM_001978 EPB49 link to infopage -0.504633 4.041416e-8 7.002562e-4 3.890312e-5
19 7998841 8119926 NM_018426 TMEM63B link to infopage -0.501886 4.915475e-8 8.517044e-4 4.482655e-5
20 7998841 7937485 NM_020376 PNPLA2 link to infopage -0.499407 5.856908e-8 1.014826e-3 5.074132e-5
21 7998841 8023968 NM_004359 CDC34 link to infopage -0.499217 5.935508e-8 1.028445e-3 4.897359e-5
22 7998841 8058869 NM_022648 TNS1 link to infopage -0.499091 5.988622e-8 1.037649e-3 4.716584e-5
23 7998841 8117034 NM_006877 GMPR link to infopage -0.494503 8.249319e-8 1.429359e-3 6.214606e-5
24 7998841 8035494 NM_012181 FKBP8 link to infopage -0.493697 8.722767e-8 1.511394e-3 6.297474e-5
25 7998841 8005707 NM_002756 MAP2K3 link to infopage -0.492230 9.651245e-8 1.672271e-3 6.689085e-5
26 7998841 7917728 NM_001006605 FAM69A link to infopage 0.490396 1.094551e-7 1.896528e-3 7.294338e-5
27 7998841 7919984 NM_003944 SELENBP1 link to infopage -0.488764 1.223463e-7 2.119894e-3 7.851458e-5
28 7998841 8168205 NM_005938 FOXO4 link to infopage -0.486155 1.460092e-7 2.529902e-3 9.035363e-5
29 7998841 7898663 NM_032409 PINK1 link to infopage -0.485917 1.483661e-7 2.570739e-3 8.864616e-5
30 7998841 7986092 NM_002569 FURIN link to infopage -0.485055 1.572311e-7 2.724343e-3 9.081145e-5
31 7998841 8132218 NM_198428 BBS9 link to infopage 0.484034 1.683963e-7 2.917803e-3 9.412266e-5
32 7998841 8164314 NM_175039 ST6GALNAC4 link to infopage -0.483911 1.697823e-7 2.941818e-3 9.193181e-5
33 7998841 8166819 ENST00000444706 link to infopage -0.483258 1.773681e-7 3.073257e-3 9.312901e-5
34 7998841 7927527 ENST00000411250 link to infopage 0.482258 1.896207e-7 3.285557e-3 9.663404e-5
35 7998841 7933593 ENST00000411250 link to infopage 0.482258 1.896207e-7 3.285557e-3 9.387307e-5
36 7998841 7963575 NM_001417 EIF4B link to infopage 0.481983 1.931255e-7 3.346286e-3 9.295238e-5
37 7998841 8024204 NM_000455 STK11 link to infopage -0.481826 1.951452e-7 3.381281e-3 9.138597e-5
38 7998841 7910372 NM_001010858 RNF187 link to infopage -0.481026 2.058145e-7 3.566148e-3 9.384599e-5
39 7998841 7932160 BC072452 FAM107B link to infopage 0.479670 2.251483e-7 3.901144e-3 1.000293e-4
40 7998841 7911229 NM_001001957 OR2W3 link to infopage -0.479558 2.268327e-7 3.930331e-3 9.825826e-5
41 7998841 7911231 NM_001001957 OR2W3 link to infopage -0.479558 2.268327e-7 3.930331e-3 9.586172e-5
42 7998841 8045009 NM_002101 GYPC link to infopage -0.477806 2.545826e-7 4.411152e-3 1.050274e-4
43 7998841 8164293 NM_000476 AK1 link to infopage -0.477778 2.550612e-7 4.419446e-3 1.027778e-4
44 7998841 8040163 NM_001039613 IAH1 link to infopage 0.477092 2.667973e-7 4.622796e-3 1.050635e-4
45 7998841 8075009 NM_031444 C22orf13 link to infopage -0.476976 2.688468e-7 4.658309e-3 1.035180e-4
46 7998841 7999217 NM_024589 ROGDI link to infopage -0.476536 2.767029e-7 4.794431e-3 1.042268e-4
47 7998841 8025421 NM_016496 MARCH2 link to infopage -0.475333 2.993241e-7 5.186389e-3 1.103487e-4
48 7998841 7923503 NM_015999 ADIPOR1 link to infopage -0.474919 3.075067e-7 5.328169e-3 1.110035e-4
49 7998841 8037835 NM_005628 SLC1A5 link to infopage -0.473930 3.279222e-7 5.681907e-3 1.159573e-4
50 7998841 8162455 NM_004148 NINJ1 link to infopage -0.473902 3.285281e-7 5.692406e-3 1.138481e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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