[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
16107	7911229	NM_001001957	OR2W3		olfactory receptor, family 2, subfamily W, member 3
16108	7911231	NM_001001957	OR2W3		olfactory receptor, family 2, subfamily W, member 3

Fetching correlation data, please wait...
Getting list of correlations for id 16107.
Getting list of p-values for id 16107.
1 of 2 done.
Getting list of correlations for id 16108.
Getting list of p-values for id 16108.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.121 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7911229	7911231	NM_001001957	OR2W3	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7911231	7911229	NM_001001957	OR2W3	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	7911231	7911218	NM_015431	TRIM58	0.976077	4.440026e-70	1.538646e-65	5.128822e-66
4	7911229	7911218	NM_015431	TRIM58	0.976077	4.440026e-70	1.538646e-65	3.846616e-66
5	7911231	8160756	NM_015397	DCAF12	0.867479	5.273903e-33	1.827618e-28	3.655237e-29
6	7911229	8160756	NM_015397	DCAF12	0.867479	5.273903e-33	1.827618e-28	3.046031e-29
7	7911229	7959173	NM_014868	RNF10	0.865612	1.031768e-32	3.575490e-28	5.107843e-29
8	7911231	7959173	NM_014868	RNF10	0.865612	1.031768e-32	3.575490e-28	4.469363e-29
9	7911229	8143387	NM_013446	MKRN1	0.857962	1.458210e-31	5.053280e-27	5.614756e-28
10	7911231	8143387	NM_013446	MKRN1	0.857962	1.458210e-31	5.053280e-27	5.053280e-28
11	7911229	7919984	NM_003944	SELENBP1	0.842160	2.187196e-29	7.579508e-25	6.890462e-26
12	7911231	7919984	NM_003944	SELENBP1	0.842160	2.187196e-29	7.579508e-25	6.316257e-26
13	7911231	8065569	NM_138578	BCL2L1	0.840750	3.330060e-29	1.153999e-24	8.876916e-26
14	7911229	8065569	NM_138578	BCL2L1	0.840750	3.330060e-29	1.153999e-24	8.242850e-26
15	7911229	7961230	NM_003651	CSDA	0.839004	5.571270e-29	1.930668e-24	1.287112e-25
16	7911231	7961230	NM_003651	CSDA	0.839004	5.571270e-29	1.930668e-24	1.206667e-25
17	7911229	8117034	NM_006877	GMPR	0.831585	4.644787e-28	1.609605e-23	9.468262e-25
18	7911231	8117034	NM_006877	GMPR	0.831585	4.644787e-28	1.609605e-23	8.942247e-25
19	7911229	7933228	NM_001002265	MARCH8	0.831519	4.731051e-28	1.639498e-23	8.628939e-25
20	7911231	7933228	NM_001002265	MARCH8	0.831519	4.731051e-28	1.639498e-23	8.197492e-25
21	7911229	8101828	NM_005723	TSPAN5	0.829385	8.539992e-28	2.959449e-23	1.409261e-24
22	7911231	8101828	NM_005723	TSPAN5	0.829385	8.539992e-28	2.959449e-23	1.345204e-24
23	7911229	7988033	NM_000119	EPB42	0.829355	8.610993e-28	2.984054e-23	1.297415e-24
24	7911231	7988033	NM_000119	EPB42	0.829355	8.610993e-28	2.984054e-23	1.243356e-24
25	7911229	7930398	NM_005962	MXI1	0.822099	6.042279e-27	2.093891e-22	8.375565e-24
26	7911231	7930398	NM_005962	MXI1	0.822099	6.042279e-27	2.093891e-22	8.053428e-24
27	7911231	7913644	NM_004091	E2F2	0.816724	2.419087e-26	8.383104e-22	3.104853e-23
28	7911229	7913644	NM_004091	E2F2	0.816724	2.419087e-26	8.383104e-22	2.993966e-23
29	7911229	7944560	NM_015313	ARHGEF12	0.814794	3.937185e-26	1.364392e-21	4.704801e-23
30	7911231	7944560	NM_015313	ARHGEF12	0.814794	3.937185e-26	1.364392e-21	4.547974e-23
31	7911231	7923503	NM_015999	ADIPOR1	0.812862	6.374534e-26	2.209031e-21	7.125907e-23
32	7911229	7923503	NM_015999	ADIPOR1	0.812862	6.374534e-26	2.209031e-21	6.903222e-23
33	7911231	8072113	NM_001013694	SRRD	0.810711	1.083085e-25	3.753322e-21	1.137370e-22
34	7911229	8072113	NM_001013694	SRRD	0.810711	1.083085e-25	3.753322e-21	1.103918e-22
35	7911231	8150439	NM_020476	ANK1	0.809954	1.302943e-25	4.515217e-21	1.290062e-22
36	7911229	8150439	NM_020476	ANK1	0.809954	1.302943e-25	4.515217e-21	1.254227e-22
37	7911231	8063583	NM_017495	RBM38	0.807400	2.417193e-25	8.376540e-21	2.263930e-22
38	7911229	8063583	NM_017495	RBM38	0.807400	2.417193e-25	8.376540e-21	2.204353e-22
39	7911231	8075009	NM_031444	C22orf13	0.806220	3.205598e-25	1.110868e-20	2.848379e-22
40	7911229	8075009	NM_031444	C22orf13	0.806220	3.205598e-25	1.110868e-20	2.777170e-22
41	7911229	8035494	NM_012181	FKBP8	0.805199	4.086437e-25	1.416114e-20	3.453936e-22
42	7911231	8035494	NM_012181	FKBP8	0.805199	4.086437e-25	1.416114e-20	3.371699e-22
43	7911229	8079796	NM_022064	RNF123	0.804438	4.891687e-25	1.695165e-20	3.942245e-22
44	7911231	8079796	NM_022064	RNF123	0.804438	4.891687e-25	1.695165e-20	3.852648e-22
45	7911231	7921133	NM_004494	HDGF	0.804025	5.393042e-25	1.868905e-20	4.153122e-22
46	7911229	7921133	NM_004494	HDGF	0.804025	5.393042e-25	1.868905e-20	4.062837e-22
47	7911229	7904361	NM_017709	FAM46C	0.799608	1.505817e-24	5.218258e-20	1.110268e-21
48	7911231	7904361	NM_017709	FAM46C	0.799608	1.505817e-24	5.218258e-20	1.087137e-21
49	7911229	8060379	NM_178578	PSMF1	0.799539	1.529782e-24	5.301308e-20	1.081900e-21
50	7911231	8060379	NM_178578	PSMF1	0.799539	1.529782e-24	5.301308e-20	1.060262e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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