[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 13872.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
13872	8026548	NM_001130524	AP1M1		adaptor-related protein complex 1, mu 1 subunit

Fetching correlation data, please wait...
Getting list of correlations for id 13872.
Getting list of p-values for id 13872.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.118 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8026548	8013191	NM_002018	FLII	0.793907	5.461150e-24	9.462534e-20	9.462534e-20
2	8026548	8004030	NM_015528	RNF167	0.778314	1.519081e-22	2.632111e-18	1.316056e-18
3	8026548	8069057	NR_024108	PFKL	0.772695	4.717878e-22	8.174668e-18	2.724889e-18
4	8026548	8087860	NM_007284	TWF2	0.769157	9.471729e-22	1.641166e-17	4.102916e-18
5	8026548	8036720	NM_019088	PAF1	0.766989	1.443048e-21	2.500369e-17	5.000739e-18
6	8026548	7904974	NR_003242	C1orf152	0.760705	4.767060e-21	8.259885e-17	1.376648e-17
7	8026548	7920877	NM_004723	ARHGEF2	0.753782	1.705617e-20	2.955323e-16	4.221890e-17
8	8026548	8024170	NM_012292	HMHA1	0.746130	6.650837e-20	1.152391e-15	1.440488e-16
9	8026548	8025895	NM_002743	PRKCSH	0.739079	2.233877e-19	3.870638e-15	4.300709e-16
10	8026548	8011516	NM_174954	ATP2A3	0.737341	2.993499e-19	5.186836e-15	5.186836e-16
11	8026548	8041826	NM_020458	TTC7A	0.733962	5.253371e-19	9.102515e-15	8.275014e-16
12	8026548	8119648	NM_057161	KLHDC3	0.729011	1.179569e-18	2.043838e-14	1.703199e-15
13	8026548	8013486	NM_015276	USP22	0.727666	1.465059e-18	2.538508e-14	1.952699e-15
14	8026548	8031536	NM_007279	U2AF2	0.727138	1.594692e-18	2.763123e-14	1.973659e-15
15	8026548	7941179	NM_005186	CAPN1	0.723249	2.957825e-18	5.125024e-14	3.416682e-15
16	8026548	7947681	NM_004308	ARHGAP1	0.720944	4.245042e-18	7.355384e-14	4.597115e-15
17	8026548	8018620	NM_001145297	EXOC7	0.720889	4.282144e-18	7.419671e-14	4.364513e-15
18	8026548	7984871	NM_004383	CSK	0.720266	4.717796e-18	8.174526e-14	4.541403e-15
19	8026548	8032871	NM_139159	DPP9	0.719438	5.365613e-18	9.296998e-14	4.893157e-15
20	8026548	8131143	NM_001040167	LFNG	0.717121	7.668742e-18	1.328763e-13	6.643814e-15
21	8026548	7941797	NM_001619	ADRBK1	0.716797	8.059997e-18	1.396556e-13	6.650265e-15
22	8026548	8080013	NM_004635	MAPKAPK3	0.716073	9.002824e-18	1.559919e-13	7.090543e-15
23	8026548	8053107	NM_004082	DCTN1	0.715064	1.050012e-17	1.819357e-13	7.910246e-15
24	8026548	7898161	NM_024329	EFHD2	0.714253	1.187476e-17	2.057540e-13	8.573082e-15
25	8026548	8027621	NM_000175	GPI	0.713810	1.269998e-17	2.200526e-13	8.802103e-15
26	8026548	7966929	NM_006861	RAB35	0.711882	1.697862e-17	2.941885e-13	1.131494e-14
27	8026548	8084439	NM_182917	EIF4G1	0.711723	1.738769e-17	3.012765e-13	1.115839e-14
28	8026548	8087885	NM_004656	BAP1	0.711238	1.869914e-17	3.240000e-13	1.157143e-14
29	8026548	7996919	NM_013245	VPS4A	0.709999	2.249623e-17	3.897923e-13	1.344111e-14
30	8026548	8010983	NM_021962	ABR	0.709930	2.272672e-17	3.937859e-13	1.312620e-14
31	8026548	7949264	NM_006795	EHD1	0.709460	2.437097e-17	4.222758e-13	1.362180e-14
32	8026548	8159692	NM_152285	ARRDC1	0.706971	3.520276e-17	6.099582e-13	1.906119e-14
33	8026548	8153819	NM_138496	CYHR1	0.706335	3.864417e-17	6.695876e-13	2.029053e-14
34	8026548	8076137	NM_015374	SUN2	0.706073	4.015782e-17	6.958146e-13	2.046513e-14
35	8026548	7941311	NM_153253	SIPA1	0.705853	4.147198e-17	7.185851e-13	2.053100e-14
36	8026548	8013696	NM_014680	KIAA0100	0.705831	4.160587e-17	7.209049e-13	2.002514e-14
37	8026548	7930031	NM_004193	GBF1	0.703836	5.563429e-17	9.639753e-13	2.605339e-14
38	8026548	8024358	NM_001319	CSNK1G2	0.703635	5.728028e-17	9.924953e-13	2.611830e-14
39	8026548	7913256	NM_005216	DDOST	0.702229	7.017874e-17	1.215987e-12	3.117916e-14
40	8026548	7968890	NM_003646	DGKZ	0.701915	7.342363e-17	1.272211e-12	3.180528e-14
41	8026548	8075924	NM_002405	MFNG	0.700562	8.915675e-17	1.544819e-12	3.767851e-14
42	8026548	8011759	NM_005022	PFN1	0.699035	1.108532e-16	1.920754e-12	4.573224e-14
43	8026548	8110803	NM_030782	CLPTM1L	0.698537	1.189711e-16	2.061412e-12	4.793981e-14
44	8026548	8005171	NM_016113	TRPV2	0.697708	1.337909e-16	2.318195e-12	5.268626e-14
45	8026548	7921752	NM_001025598	ARHGAP30	0.695493	1.827501e-16	3.166512e-12	7.036693e-14
46	8026548	7919950	NM_002651	PI4KB	0.695180	1.909307e-16	3.308257e-12	7.191862e-14
47	8026548	8077595	NM_001003694	BRPF1	0.694821	2.007729e-16	3.478793e-12	7.401687e-14
48	8026548	8074030	NM_014678	PPP6R2	0.693876	2.290616e-16	3.968951e-12	8.268648e-14
49	8026548	8074432	NM_003325	HIRA	0.691811	3.049993e-16	5.284723e-12	1.078515e-13
50	8026548	8073682	NM_022141	PARVG	0.689777	4.034095e-16	6.989877e-12	1.397975e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation