[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 16147.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16147	7921752	NM_001025598	ARHGAP30		Rho GTPase activating protein 30

Fetching correlation data, please wait...
Getting list of correlations for id 16147.
Getting list of p-values for id 16147.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.120 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7921752	7956443	NM_004990	MARS	0.875114	3.038117e-34	5.264146e-30	5.264146e-30
2	7921752	8077550	NM_001077525	MTMR14	0.868430	3.732790e-33	6.467805e-29	3.233903e-29
3	7921752	7956593	NM_006812	OS9	0.863734	2.006565e-32	3.476775e-28	1.158925e-28
4	7921752	8082478	NM_016128	COPG	0.862764	2.818098e-32	4.882919e-28	1.220730e-28
5	7921752	7963935	NM_032364	DNAJC14	0.851587	1.180205e-30	2.044941e-26	4.089881e-27
6	7921752	7967841	NM_001161344	CHFR	0.844005	1.254340e-29	2.173395e-25	3.622326e-26
7	7921752	7978208	NM_012461	TINF2	0.837312	9.120872e-29	1.580374e-24	2.257676e-25
8	7921752	7963721	NM_020898	CALCOCO1	0.835165	1.691180e-28	2.930308e-24	3.662885e-25
9	7921752	8132539	NM_014063	DBNL	0.834386	2.111394e-28	3.658412e-24	4.064902e-25
10	7921752	8089911	NM_005335	HCLS1	0.833414	2.780406e-28	4.817610e-24	4.817610e-25
11	7921752	8016980	hsa-mir-142		0.828593	1.061006e-27	1.838406e-23	1.671278e-24
12	7921752	7982531	NM_006305	ANP32A	0.828234	1.170405e-27	2.027960e-23	1.689967e-24
13	7921752	8093086	NM_005017	PCYT1A	0.827226	1.539352e-27	2.667235e-23	2.051720e-24
14	7921752	8013191	NM_002018	FLII	0.825126	2.709874e-27	4.695398e-23	3.353856e-24
15	7921752	8011884	NM_033004	NLRP1	0.817135	2.179377e-26	3.776207e-22	2.517471e-23
16	7921752	8115783	NM_005990	STK10	0.814265	4.495031e-26	7.788540e-22	4.867838e-23
17	7921752	7947894	NM_198700	CELF1	0.812190	7.527880e-26	1.304356e-21	7.672681e-23
18	7921752	8013696	NM_014680	KIAA0100	0.809556	1.435666e-25	2.487579e-21	1.381988e-22
19	7921752	7928369	NM_004922	SEC24C	0.809084	1.610169e-25	2.789940e-21	1.468389e-22
20	7921752	8146171	NM_001556	IKBKB	0.808168	2.009309e-25	3.481529e-21	1.740765e-22
21	7921752	8011542	NM_015113	ZZEF1	0.808032	2.076181e-25	3.597398e-21	1.713047e-22
22	7921752	8044584	NM_012455	PSD4	0.805557	3.753484e-25	6.503661e-21	2.956210e-22
23	7921752	7994659	NM_017458	MVP	0.802654	7.437849e-25	1.288756e-20	5.603288e-22
24	7921752	7925851	NM_014023	WDR37	0.802450	7.801228e-25	1.351719e-20	5.632162e-22
25	7921752	7999233	NM_032569	GLYR1	0.802176	8.315610e-25	1.440846e-20	5.763383e-22
26	7921752	8063636	NM_001001433	STX16	0.802092	8.478299e-25	1.469035e-20	5.650134e-22
27	7921752	8026638	NM_004145	MYO9B	0.800413	1.251378e-24	2.168263e-20	8.030606e-22
28	7921752	8009183	NM_203351	MAP3K3	0.800127	1.336513e-24	2.315776e-20	8.270630e-22
29	7921752	7940051	NM_015457	ZDHHC5	0.799847	1.425472e-24	2.469916e-20	8.516951e-22
30	7921752	7996725	NM_017803	DUS2L	0.798994	1.733379e-24	3.003426e-20	1.001142e-21
31	7921752	8005903	NM_003170	SUPT6H	0.798506	1.938086e-24	3.358122e-20	1.083265e-21
32	7921752	8015955	NM_020218	ATXN7L3	0.797060	2.691956e-24	4.664353e-20	1.457610e-21
33	7921752	7922669	NM_005819	STX6	0.796725	2.903323e-24	5.030587e-20	1.524420e-21
34	7921752	7897078	NM_007033	RER1	0.795780	3.592241e-24	6.224276e-20	1.830670e-21
35	7921752	8025076	NM_005428	VAV1	0.795654	3.695697e-24	6.403535e-20	1.829581e-21
36	7921752	7973660	NM_016576	GMPR2	0.794078	5.256646e-24	9.108190e-20	2.530053e-21
37	7921752	8117485	NM_078476	BTN2A1	0.793671	5.754301e-24	9.970476e-20	2.694723e-21
38	7921752	8099340	NM_017491	WDR1	0.791289	9.733789e-24	1.686574e-19	4.438352e-21
39	7921752	8132646	NM_031443	CCM2	0.789875	1.325586e-23	2.296844e-19	5.889343e-21
40	7921752	8019046	NM_014740	EIF4A3	0.788937	1.624774e-23	2.815246e-19	7.038116e-21
41	7921752	8146142	NM_178819	AGPAT6	0.787426	2.250721e-23	3.899824e-19	9.511765e-21
42	7921752	7995096	NM_001145808	ITGAM	0.786734	2.610387e-23	4.523017e-19	1.076909e-20
43	7921752	7900382	NM_006367	CAP1	0.785813	3.176759e-23	5.504370e-19	1.280086e-20
44	7921752	7913001	NM_020765	UBR4	0.785662	3.280493e-23	5.684110e-19	1.291843e-20
45	7921752	8133434	NM_022170	EIF4H	0.785637	3.298002e-23	5.714448e-19	1.269877e-20
46	7921752	8063369	NM_018683	RNF114	0.785518	3.382701e-23	5.861206e-19	1.274175e-20
47	7921752	8156373	NM_001083536	FGD3	0.785497	3.397860e-23	5.887473e-19	1.252654e-20
48	7921752	7990211	NM_000520	HEXA	0.785426	3.449514e-23	5.976972e-19	1.245203e-20
49	7921752	7906703	NM_004550	NDUFS2	0.784708	4.016894e-23	6.960072e-19	1.420423e-20
50	7921752	8160914	NM_007126	VCP	0.784157	4.512990e-23	7.819657e-19	1.563931e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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