[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
15138	8132646	NM_031443	CCM2		cerebral cavernous malformation 2

Fetching correlation data, please wait...
Getting list of correlations for id 15138.
Getting list of p-values for id 15138.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.142 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8132646	8039796	NM_014453	CHMP2A	0.811335	9.294741e-26	1.610500e-21	1.610500e-21
2	8132646	8089911	NM_005335	HCLS1	0.810430	1.160089e-25	2.010087e-21	1.005043e-21
3	8132646	7963911	NM_001780	CD63	0.809409	1.487787e-25	2.577888e-21	8.592959e-22
4	8132646	7962869	NM_004818	DDX23	0.801155	1.054030e-24	1.826317e-20	4.565793e-21
5	8132646	8019046	NM_014740	EIF4A3	0.800759	1.155165e-24	2.001554e-20	4.003108e-21
6	8132646	7921752	NM_001025598	ARHGAP30	0.789875	1.325586e-23	2.296844e-19	3.828073e-20
7	8132646	8025076	NM_005428	VAV1	0.787075	2.426657e-23	4.204669e-19	6.006670e-20
8	8132646	8018364	NM_002086	GRB2	0.785259	3.574019e-23	6.192702e-19	7.740877e-20
9	8132646	7941709	NM_002896	RBM4	0.780889	8.937787e-23	1.548650e-18	1.720723e-19
10	8132646	7973660	NM_016576	GMPR2	0.779771	1.126373e-22	1.951666e-18	1.951666e-19
11	8132646	8018305	NM_016185	HN1	0.779636	1.157978e-22	2.006428e-18	1.824026e-19
12	8132646	7983512	NM_021199	SQRDL	0.777970	1.629751e-22	2.823870e-18	2.353225e-19
13	8132646	8028514	NM_013234	EIF3K	0.777704	1.720682e-22	2.981426e-18	2.293405e-19
14	8132646	7978201	NM_006156	NEDD8	0.777199	1.907082e-22	3.304400e-18	2.360286e-19
15	8132646	7922637	NM_145034	TOR1AIP2	0.773139	4.319021e-22	7.483568e-18	4.989046e-19
16	8132646	7937287	NM_002817	PSMD13	0.771869	5.557762e-22	9.629934e-18	6.018709e-19
17	8132646	7906703	NM_004550	NDUFS2	0.771773	5.663953e-22	9.813931e-18	5.772901e-19
18	8132646	8093086	NM_005017	PCYT1A	0.771503	5.975121e-22	1.035309e-17	5.751717e-19
19	8132646	7994756	NM_002720	PPP4C	0.770195	7.729368e-22	1.339268e-17	7.048777e-19
20	8132646	7921738	NM_007122	USF1	0.769701	8.515742e-22	1.475523e-17	7.377613e-19
21	8132646	7899504	NM_006582	GMEB1	0.766764	1.507012e-21	2.611199e-17	1.243428e-18
22	8132646	7978208	NM_012461	TINF2	0.764508	2.323284e-21	4.025554e-17	1.829797e-18
23	8132646	8049180	NM_004846	EIF4E2	0.763285	2.931646e-21	5.079663e-17	2.208549e-18
24	8132646	8119408	NM_002505	NFYA	0.763256	2.947695e-21	5.107472e-17	2.128113e-18
25	8132646	7956593	NM_006812	OS9	0.759704	5.746604e-21	9.957140e-17	3.982856e-18
26	8132646	8036710	NM_004877	GMFG	0.759414	6.066079e-21	1.051070e-16	4.042575e-18
27	8132646	8024936	NM_002967	SAFB	0.759190	6.324190e-21	1.095792e-16	4.058490e-18
28	8132646	7935647	NM_078470	COX15	0.758972	6.585528e-21	1.141074e-16	4.075266e-18
29	8132646	7999233	NM_032569	GLYR1	0.757674	8.372891e-21	1.450771e-16	5.002658e-18
30	8132646	8132539	NM_014063	DBNL	0.757560	8.551736e-21	1.481759e-16	4.939198e-18
31	8132646	8116020	NM_006816	LMAN2	0.757047	9.398268e-21	1.628438e-16	5.253025e-18
32	8132646	7963935	NM_032364	DNAJC14	0.756100	1.118290e-20	1.937661e-16	6.055189e-18
33	8132646	8108568	NM_006083	IK	0.755826	1.175741e-20	2.037207e-16	6.173354e-18
34	8132646	7967841	NM_001161344	CHFR	0.753839	1.687968e-20	2.924742e-16	8.602182e-18
35	8132646	7947894	NM_198700	CELF1	0.753624	1.754995e-20	3.040880e-16	8.688229e-18
36	8132646	7915758	NM_021639	GPBP1L1	0.753418	1.821466e-20	3.156055e-16	8.766819e-18
37	8132646	8080923	NM_002802	PSMC1	0.750967	2.829747e-20	4.903102e-16	1.325163e-17
38	8132646	8077550	NM_001077525	MTMR14	0.749553	3.639866e-20	6.306795e-16	1.659683e-17
39	8132646	7977657	NM_031314	HNRNPC	0.747657	5.089080e-20	8.817848e-16	2.260987e-17
40	8132646	8006392	NM_002815	PSMD11	0.747505	5.226961e-20	9.056755e-16	2.264189e-17
41	8132646	7982531	NM_006305	ANP32A	0.747196	5.517733e-20	9.560576e-16	2.331848e-17
42	8132646	8140151	NM_181471	RFC2	0.745910	6.910584e-20	1.197397e-15	2.850945e-17
43	8132646	7932069	NM_014142	NUDT5	0.745905	6.916799e-20	1.198474e-15	2.787148e-17
44	8132646	7941511	NM_006842	SF3B2	0.745655	7.225170e-20	1.251905e-15	2.845239e-17
45	8132646	8009227	NM_002805	PSMC5	0.744924	8.204866e-20	1.421657e-15	3.159238e-17
46	8132646	8079662	NM_006321	ARIH2	0.744845	8.317731e-20	1.441213e-15	3.133072e-17
47	8132646	8102006	NM_005908	MANBA	0.744066	9.521285e-20	1.649753e-15	3.510113e-17
48	8132646	7937465	NM_006755	TALDO1	0.743943	9.725585e-20	1.685152e-15	3.510734e-17
49	8132646	8049199	NM_001103147	GIGYF2	0.742906	1.163021e-19	2.015167e-15	4.112586e-17
50	8132646	7975863	NM_017926	C14orf118	0.742840	1.176282e-19	2.038143e-15	4.076286e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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