[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
8808	7899504	NM_006582	GMEB1		glucocorticoid modulatory element binding protein 1

Fetching correlation data, please wait...
Getting list of correlations for id 8808.
Getting list of p-values for id 8808.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.164 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7899504	8006392	NM_002815	PSMD11	0.853789	5.797123e-31	1.004467e-26	1.004467e-26
2	7899504	7947894	NM_198700	CELF1	0.851709	1.135152e-30	1.966878e-26	9.834392e-27
3	7899504	8061186	NM_006363	SEC23B	0.839823	4.379598e-29	7.588530e-25	2.529510e-25
4	7899504	8018600	NM_014230	SRP68	0.836877	1.034315e-28	1.792158e-24	4.480396e-25
5	7899504	7913169	NM_004930	CAPZB	0.830473	6.325666e-28	1.096048e-23	2.192096e-24
6	7899504	8045090	NM_020120	UGGT1	0.827421	1.460349e-27	2.530347e-23	4.217245e-24
7	7899504	8101324	NM_031370	HNRNPD	0.827345	1.490621e-27	2.582799e-23	3.689713e-24
8	7899504	7952557	NM_003139	SRPR	0.825076	2.746724e-27	4.759249e-23	5.949061e-24
9	7899504	8018922	NM_004762	CYTH1	0.824483	3.217215e-27	5.574468e-23	6.193854e-24
10	7899504	7900119	NM_005119	THRAP3	0.822895	4.901055e-27	8.492057e-23	8.492057e-24
11	7899504	7959282	NM_194271	RNF34	0.821573	6.935347e-27	1.201688e-22	1.092443e-23
12	7899504	7941709	NM_002896	RBM4	0.821003	8.048786e-27	1.394613e-22	1.162178e-23
13	7899504	7944285	NM_001655	ARCN1	0.820491	9.196120e-27	1.593412e-22	1.225701e-23
14	7899504	7997168	NM_014761	KIAA0174	0.817825	1.827646e-26	3.166762e-22	2.261973e-23
15	7899504	8021228	NM_005359	SMAD4	0.817385	2.044744e-26	3.542927e-22	2.361951e-23
16	7899504	8049199	NM_001103147	GIGYF2	0.816297	2.695485e-26	4.670467e-22	2.919042e-23
17	7899504	8164177	NM_001006617	MAPKAP1	0.815562	3.246107e-26	5.624529e-22	3.308547e-23
18	7899504	7975863	NM_017926	C14orf118	0.813782	5.071196e-26	8.786861e-22	4.881590e-23
19	7899504	8007885	NM_006178	NSF	0.813684	5.196835e-26	9.004556e-22	4.739240e-23
20	7899504	8071547	NM_198157	UBE2L3	0.810935	1.025158e-25	1.776291e-21	8.881455e-23
21	7899504	7990487	NM_015477	SIN3A	0.810738	1.075859e-25	1.864141e-21	8.876863e-23
22	7899504	7945132	NM_002017	FLI1	0.809981	1.294609e-25	2.243168e-21	1.019622e-22
23	7899504	7941511	NM_006842	SF3B2	0.809349	1.509769e-25	2.615977e-21	1.137381e-22
24	7899504	7999233	NM_032569	GLYR1	0.808192	1.997739e-25	3.461482e-21	1.442284e-22
25	7899504	7925851	NM_014023	WDR37	0.808054	2.065065e-25	3.578138e-21	1.431255e-22
26	7899504	8171516	NM_002893	RBBP7	0.808042	2.071219e-25	3.588801e-21	1.380308e-22
27	7899504	7978718	NM_006364	SEC23A	0.807800	2.195592e-25	3.804303e-21	1.409001e-22
28	7899504	8168280	NM_001145408	NONO	0.807724	2.236181e-25	3.874630e-21	1.383796e-22
29	7899504	7972840	NM_006322	TUBGCP3	0.807199	2.536690e-25	4.395323e-21	1.515629e-22
30	7899504	7903619	NM_006513	SARS	0.806744	2.828231e-25	4.900476e-21	1.633492e-22
31	7899504	8101376	NM_014933	SEC31A	0.806620	2.913578e-25	5.048356e-21	1.628502e-22
32	7899504	8048847	NM_001135187	AGFG1	0.804724	4.573024e-25	7.923679e-21	2.476150e-22
33	7899504	8068289	NM_138927	SON	0.804519	4.799579e-25	8.316230e-21	2.520070e-22
34	7899504	8064351	NM_177559	CSNK2A1	0.804164	5.218878e-25	9.042750e-21	2.659632e-22
35	7899504	8115765	NM_033644	FBXW11	0.803160	6.607837e-25	1.144940e-20	3.271257e-22
36	7899504	8100251	NM_015030	FRYL	0.803030	6.811404e-25	1.180212e-20	3.278367e-22
37	7899504	8145586	NM_018091	ELP3	0.802081	8.501813e-25	1.473109e-20	3.981376e-22
38	7899504	8163023	NM_003640	IKBKAP	0.801596	9.516128e-25	1.648859e-20	4.339104e-22
39	7899504	8164165	NM_005347	HSPA5	0.801510	9.708600e-25	1.682209e-20	4.313357e-22
40	7899504	7928171	NM_003901	SGPL1	0.800547	1.213041e-24	2.101836e-20	5.254591e-22
41	7899504	7900833	NM_014663	KDM4A	0.800222	1.307677e-24	2.265811e-20	5.526369e-22
42	7899504	8006850	NM_016507	CDK12	0.800042	1.362911e-24	2.361516e-20	5.622656e-22
43	7899504	8145954	NM_006283	TACC1	0.799871	1.417553e-24	2.456194e-20	5.712078e-22
44	7899504	8079662	NM_006321	ARIH2	0.797884	2.233010e-24	3.869137e-20	8.793494e-22
45	7899504	7984641	NM_005744	ARIH1	0.797797	2.277479e-24	3.946188e-20	8.769307e-22
46	7899504	7993680	BC050464	C16orf62	0.797482	2.446413e-24	4.238901e-20	9.215001e-22
47	7899504	7906703	NM_004550	NDUFS2	0.797272	2.565614e-24	4.445439e-20	9.458381e-22
48	7899504	8146171	NM_001556	IKBKB	0.795959	3.450598e-24	5.978851e-20	1.245594e-21
49	7899504	7940051	NM_015457	ZDHHC5	0.795714	3.645950e-24	6.317337e-20	1.289252e-21
50	7899504	7973214	NM_014828	TOX4	0.795065	4.217323e-24	7.307355e-20	1.461471e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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