[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
14346	7941709	NM_002896	RBM4		RNA binding motif protein 4

Fetching correlation data, please wait...
Getting list of correlations for id 14346.
Getting list of p-values for id 14346.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.202 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7941709	8006392	NM_002815	PSMD11	0.870409	1.802334e-33	3.122905e-29	3.122905e-29
2	7941709	8101324	NM_031370	HNRNPD	0.856325	2.518677e-31	4.364111e-27	2.182055e-27
3	7941709	8018600	NM_014230	SRP68	0.847292	4.574423e-30	7.926103e-26	2.642034e-26
4	7941709	8136539	NM_016019	LUC7L2	0.840928	3.158491e-29	5.472717e-25	1.368179e-25
5	7941709	8006573	NM_139215	TAF15	0.835709	1.447630e-28	2.508308e-24	5.016615e-25
6	7941709	7906703	NM_004550	NDUFS2	0.833439	2.761126e-28	4.784203e-24	7.973671e-25
7	7941709	8049199	NM_001103147	GIGYF2	0.832933	3.183810e-28	5.516588e-24	7.880840e-25
8	7941709	7947894	NM_198700	CELF1	0.830203	6.815402e-28	1.180905e-23	1.476131e-24
9	7941709	7978718	NM_006364	SEC23A	0.829308	8.722297e-28	1.511312e-23	1.679236e-24
10	7941709	7959282	NM_194271	RNF34	0.826478	1.884743e-27	3.265694e-23	3.265694e-24
11	7941709	8160914	NM_007126	VCP	0.824776	2.975361e-27	5.155409e-23	4.686735e-24
12	7941709	8168280	NM_001145408	NONO	0.823478	4.201130e-27	7.279297e-23	6.066081e-24
13	7941709	8019046	NM_014740	EIF4A3	0.823384	4.307564e-27	7.463716e-23	5.741320e-24
14	7941709	7980463	NM_012245	SNW1	0.822269	5.779485e-27	1.001411e-22	7.152938e-24
15	7941709	8093156	NM_007362	NCBP2	0.821806	6.525306e-27	1.130640e-22	7.537598e-24
16	7941709	7944285	NM_001655	ARCN1	0.821324	7.402143e-27	1.282569e-22	8.016058e-24
17	7941709	7899504	NM_006582	GMEB1	0.821003	8.048786e-27	1.394613e-22	8.203607e-24
18	7941709	8018922	NM_004762	CYTH1	0.819906	1.070230e-26	1.854387e-22	1.030215e-23
19	7941709	8050908	NM_000182	HADHA	0.819474	1.196464e-26	2.073113e-22	1.091112e-23
20	7941709	8058428	NM_005006	NDUFS1	0.819308	1.249069e-26	2.164262e-22	1.082131e-23
21	7941709	8006148	NM_004871	GOSR1	0.818322	1.609291e-26	2.788419e-22	1.327818e-23
22	7941709	7952557	NM_003139	SRPR	0.818177	1.670285e-26	2.894102e-22	1.315501e-23
23	7941709	7990211	NM_000520	HEXA	0.815671	3.157813e-26	5.471543e-22	2.378932e-23
24	7941709	8109368	NM_005754	G3BP1	0.814813	3.918920e-26	6.790312e-22	2.829297e-23
25	7941709	7975863	NM_017926	C14orf118	0.814557	4.178105e-26	7.239403e-22	2.895761e-23
26	7941709	8024936	NM_002967	SAFB	0.813140	5.949789e-26	1.030920e-21	3.965077e-23
27	7941709	8163784	NM_012164	FBXW2	0.813081	6.037241e-26	1.046073e-21	3.874343e-23
28	7941709	8136631	NM_003143	SSBP1	0.812558	6.873409e-26	1.190956e-21	4.253413e-23
29	7941709	8066668	NM_020967	NCOA5	0.812083	7.729575e-26	1.339303e-21	4.618288e-23
30	7941709	7903619	NM_006513	SARS	0.811999	7.891194e-26	1.367307e-21	4.557690e-23
31	7941709	8024238	NM_001280	CIRBP	0.811930	8.028117e-26	1.391032e-21	4.487199e-23
32	7941709	7995069	NM_004960	FUS	0.811925	8.038134e-26	1.392768e-21	4.352399e-23
33	7941709	8099340	NM_017491	WDR1	0.811915	8.056650e-26	1.395976e-21	4.230230e-23
34	7941709	8094704	NM_005339	UBE2K	0.811768	8.355163e-26	1.447699e-21	4.257938e-23
35	7941709	8171516	NM_002893	RBBP7	0.811250	9.490769e-26	1.644465e-21	4.698473e-23
36	7941709	7962869	NM_004818	DDX23	0.809845	1.338216e-25	2.318726e-21	6.440906e-23
37	7941709	8104166	NM_004168	SDHA	0.809365	1.503936e-25	2.605870e-21	7.042893e-23
38	7941709	7955721	NM_001004304	ZNF740	0.808398	1.900779e-25	3.293480e-21	8.667053e-23
39	7941709	8129181	NM_020399	GOPC	0.807277	2.489464e-25	4.313494e-21	1.106024e-22
40	7941709	8049180	NM_004846	EIF4E2	0.807170	2.554255e-25	4.425757e-21	1.106439e-22
41	7941709	8001185	NM_005880	DNAJA2	0.806646	2.895275e-25	5.016643e-21	1.223571e-22
42	7941709	8175052	NM_001130847	AIFM1	0.806605	2.924165e-25	5.066700e-21	1.206357e-22
43	7941709	8048120	NM_004044	ATIC	0.804504	4.816988e-25	8.346396e-21	1.941022e-22
44	7941709	7901447	NM_032864	PRPF38A	0.804243	5.122640e-25	8.875998e-21	2.017272e-22
45	7941709	8062213	NM_016436	PHF20	0.804095	5.304146e-25	9.190494e-21	2.042332e-22
46	7941709	7948744	NM_198335	GANAB	0.803908	5.543463e-25	9.605159e-21	2.088078e-22
47	7941709	8132070	NM_002047	GARS	0.803364	6.299249e-25	1.091471e-20	2.322278e-22
48	7941709	7935647	NM_078470	COX15	0.802759	7.257497e-25	1.257507e-20	2.619805e-22
49	7941709	7899774	NM_004964	HDAC1	0.802548	7.623618e-25	1.320944e-20	2.695805e-22
50	7941709	8091048	NR_023350	COPB2	0.802000	8.662962e-25	1.501031e-20	3.002063e-22

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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