[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
15166	8050908	NM_000182	HADHA		hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit

Fetching correlation data, please wait...
Getting list of correlations for id 15166.
Getting list of p-values for id 15166.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.323 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8050908	8025429	NM_005968	HNRNPM	0.899669	7.331379e-39	1.270308e-34	1.270308e-34
2	8050908	8018315	NM_006937	SUMO2	0.899236	9.051579e-39	1.568367e-34	7.841835e-35
3	8050908	8006392	NM_002815	PSMD11	0.883384	1.107981e-35	1.919798e-31	6.399326e-32
4	8050908	8164155	NM_001123355	PPP6C	0.875290	2.837682e-34	4.916852e-30	1.229213e-30
5	8050908	7993680	BC050464	C16orf62	0.872147	9.411584e-34	1.630745e-29	3.261490e-30
6	8050908	8094704	NM_005339	UBE2K	0.869227	2.787956e-33	4.830691e-29	8.051152e-30
7	8050908	7978718	NM_006364	SEC23A	0.865139	1.221030e-32	2.115678e-28	3.022397e-29
8	8050908	7900119	NM_005119	THRAP3	0.864858	1.349505e-32	2.338286e-28	2.922858e-29
9	8050908	8027592	NM_001114093	LSM14A	0.863851	1.925785e-32	3.336808e-28	3.707564e-29
10	8050908	7990211	NM_000520	HEXA	0.863839	1.933978e-32	3.351003e-28	3.351003e-29
11	8050908	8163784	NM_012164	FBXW2	0.861709	4.065357e-32	7.044044e-28	6.403677e-29
12	8050908	8021228	NM_005359	SMAD4	0.861619	4.193853e-32	7.266689e-28	6.055574e-29
13	8050908	8133434	NM_022170	EIF4H	0.858728	1.126493e-31	1.951875e-27	1.501442e-28
14	8050908	8117888	NM_006325	RAN	0.857040	1.985213e-31	3.439779e-27	2.456985e-28
15	8050908	7982204	NM_005517	HMGN2	0.855671	3.127446e-31	5.418925e-27	3.612617e-28
16	8050908	8178322	NM_006937	SUMO2	0.855667	3.131561e-31	5.426055e-27	3.391284e-28
17	8050908	7906703	NM_004550	NDUFS2	0.855615	3.185969e-31	5.520328e-27	3.247252e-28
18	8050908	8164177	NM_001006617	MAPKAP1	0.854477	4.630515e-31	8.023293e-27	4.457385e-28
19	8050908	8040639	NM_000183	HADHB	0.852007	1.031697e-30	1.787621e-26	9.408534e-28
20	8050908	8099340	NM_017491	WDR1	0.851099	1.379839e-30	2.390847e-26	1.195423e-27
21	8050908	8146216	NM_001135694	VDAC3	0.850853	1.492112e-30	2.585383e-26	1.231135e-27
22	8050908	8050278	NM_005742	PDIA6	0.849927	2.002304e-30	3.469392e-26	1.576996e-27
23	8050908	8174636	NM_006937	SUMO2	0.849634	2.196649e-30	3.806134e-26	1.654841e-27
24	8050908	8166805	NM_005765	ATP6AP2	0.848160	3.490878e-30	6.048645e-26	2.520269e-27
25	8050908	8132943	NM_001762	CCT6A	0.846945	5.094076e-30	8.826506e-26	3.530602e-27
26	8050908	8160914	NM_007126	VCP	0.846585	5.693018e-30	9.864292e-26	3.793958e-27
27	8050908	8110589	NM_015455	CNOT6	0.845678	7.529017e-30	1.304553e-25	4.831677e-27
28	8050908	7918345	NM_002790	PSMA5	0.845462	8.045146e-30	1.393982e-25	4.978509e-27
29	8050908	8000409	NM_005517	HMGN2	0.844585	1.051732e-29	1.822336e-25	6.283916e-27
30	8050908	8168500	NM_000291	PGK1	0.843782	1.341897e-29	2.325104e-25	7.750347e-27
31	8050908	8138773	NM_022170	EIF4H	0.843174	1.612758e-29	2.794426e-25	9.014278e-27
32	8050908	8062174	NM_198398	ERGIC3	0.840795	3.285457e-29	5.692712e-25	1.778972e-26
33	8050908	8064351	NM_177559	CSNK2A1	0.840410	3.682985e-29	6.381508e-25	1.933790e-26
34	8050908	7966427	NM_006768	BRAP	0.840154	3.972099e-29	6.882456e-25	2.024252e-26
35	8050908	7997168	NM_014761	KIAA0174	0.840117	4.015586e-29	6.957805e-25	1.987944e-26
36	8050908	8101324	NM_031370	HNRNPD	0.838031	7.402214e-29	1.282582e-24	3.562727e-26
37	8050908	8001185	NM_005880	DNAJA2	0.837756	8.018461e-29	1.389359e-24	3.755024e-26
38	8050908	7944285	NM_001655	ARCN1	0.837033	9.888249e-29	1.713337e-24	4.508781e-26
39	8050908	8078738	NM_005109	OXSR1	0.836992	1.000776e-28	1.734045e-24	4.446268e-26
40	8050908	7934852	NM_005271	GLUD1	0.836957	1.010715e-28	1.751265e-24	4.378163e-26
41	8050908	8061186	NM_006363	SEC23B	0.836118	1.287315e-28	2.230531e-24	5.440319e-26
42	8050908	7963244	NM_005653	TFCP2	0.834731	1.914036e-28	3.316450e-24	7.896310e-26
43	8050908	7957746	NM_213611	SLC25A3	0.834107	2.285210e-28	3.959584e-24	9.208334e-26
44	8050908	7959282	NM_194271	RNF34	0.833340	2.839435e-28	4.919889e-24	1.118157e-25
45	8050908	7903294	NM_033055	HIAT1	0.832679	3.419570e-28	5.925088e-24	1.316686e-25
46	8050908	7931187	NM_004725	BUB3	0.832609	3.487514e-28	6.042815e-24	1.313655e-25
47	8050908	8109368	NM_005754	G3BP1	0.832452	3.644689e-28	6.315153e-24	1.343650e-25
48	8050908	7980833	NM_032560	SMEK1	0.832309	3.793875e-28	6.573647e-24	1.369510e-25
49	8050908	8150797	NM_015941	ATP6V1H	0.832067	4.059475e-28	7.033853e-24	1.435480e-25
50	8050908	8008113	NM_005831	CALCOCO2	0.831918	4.232186e-28	7.333108e-24	1.466622e-25

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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