[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
12317	7963244	NM_005653	TFCP2		transcription factor CP2

Fetching correlation data, please wait...
Getting list of correlations for id 12317.
Getting list of p-values for id 12317.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.122 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7963244	7913169	NM_004930	CAPZB	0.865558	1.052045e-32	1.822879e-28	1.822879e-28
2	7963244	7997168	NM_014761	KIAA0174	0.863160	2.453631e-32	4.251406e-28	2.125703e-28
3	7963244	7900119	NM_005119	THRAP3	0.850941	1.451061e-30	2.514254e-26	8.380845e-27
4	7963244	8050908	NM_000182	HADHA	0.834731	1.914036e-28	3.316450e-24	8.291126e-25
5	7963244	7955908	NM_005337	NCKAP1L	0.833823	2.476693e-28	4.291366e-24	8.582733e-25
6	7963244	8163784	NM_012164	FBXW2	0.831170	5.214177e-28	9.034604e-24	1.505767e-24
7	7963244	7905700	NM_014847	UBAP2L	0.828851	9.887035e-28	1.713127e-23	2.447324e-24
8	7963244	8064351	NM_177559	CSNK2A1	0.827709	1.350186e-27	2.339467e-23	2.924334e-24
9	7963244	8062349	NM_002951	RPN2	0.827507	1.426473e-27	2.471649e-23	2.746277e-24
10	7963244	8018922	NM_004762	CYTH1	0.822869	4.935045e-27	8.550953e-23	8.550953e-24
11	7963244	8018315	NM_006937	SUMO2	0.822381	5.610987e-27	9.722158e-23	8.838325e-24
12	7963244	8006392	NM_002815	PSMD11	0.821120	7.806143e-27	1.352570e-22	1.127142e-23
13	7963244	8027592	NM_001114093	LSM14A	0.821033	7.986557e-27	1.383831e-22	1.064485e-23
14	7963244	7947894	NM_198700	CELF1	0.817436	2.018461e-26	3.497388e-22	2.498134e-23
15	7963244	8174636	NM_006937	SUMO2	0.816925	2.298563e-26	3.982721e-22	2.655147e-23
16	7963244	8045090	NM_020120	UGGT1	0.816630	2.477386e-26	4.292566e-22	2.682854e-23
17	7963244	8013696	NM_014680	KIAA0100	0.816453	2.591534e-26	4.490351e-22	2.641383e-23
18	7963244	8160914	NM_007126	VCP	0.815171	3.581502e-26	6.205669e-22	3.447594e-23
19	7963244	8082478	NM_016128	COPG	0.814654	4.077826e-26	7.065649e-22	3.718762e-23
20	7963244	7925851	NM_014023	WDR37	0.814398	4.347507e-26	7.532926e-22	3.766463e-23
21	7963244	8001841	NM_006141	DYNC1LI2	0.814301	4.454294e-26	7.717955e-22	3.675217e-23
22	7963244	7984155	NM_003099	SNX1	0.813699	5.177814e-26	8.971598e-22	4.077999e-23
23	7963244	7987840	NM_015289	VPS39	0.812651	6.717098e-26	1.163872e-21	5.060311e-23
24	7963244	7940486	BC002331	SDHAF2	0.811806	8.277054e-26	1.434165e-21	5.975688e-23
25	7963244	7982204	NM_005517	HMGN2	0.810192	1.229519e-25	2.130387e-21	8.521547e-23
26	7963244	7982531	NM_006305	ANP32A	0.809821	1.345938e-25	2.332107e-21	8.969640e-23
27	7963244	8101376	NM_014933	SEC31A	0.808896	1.685186e-25	2.919921e-21	1.081452e-22
28	7963244	8025429	NM_005968	HNRNPM	0.807061	2.621591e-25	4.542430e-21	1.622296e-22
29	7963244	7907702	NM_003101	SOAT1	0.806532	2.975734e-25	5.156055e-21	1.777950e-22
30	7963244	7960594	NM_001273	CHD4	0.806509	2.992309e-25	5.184774e-21	1.728258e-22
31	7963244	8154059	NM_003070	SMARCA2	0.806225	3.201609e-25	5.547428e-21	1.789493e-22
32	7963244	8002592	NM_001030007	AP1G1	0.805604	3.711891e-25	6.431594e-21	2.009873e-22
33	7963244	7940051	NM_015457	ZDHHC5	0.805184	4.100784e-25	7.105428e-21	2.153160e-22
34	7963244	7990211	NM_000520	HEXA	0.805108	4.175773e-25	7.235362e-21	2.128048e-22
35	7963244	8117888	NM_006325	RAN	0.804646	4.657581e-25	8.070191e-21	2.305769e-22
36	7963244	8109462	NM_004779	CNOT8	0.803918	5.529449e-25	9.580876e-21	2.661355e-22
37	7963244	8054888	NM_015282	CLASP1	0.802944	6.950116e-25	1.204247e-20	3.254720e-22
38	7963244	8133434	NM_022170	EIF4H	0.802605	7.522980e-25	1.303507e-20	3.430281e-22
39	7963244	8061186	NM_006363	SEC23B	0.801965	8.734607e-25	1.513445e-20	3.880629e-22
40	7963244	8000409	NM_005517	HMGN2	0.800897	1.118809e-24	1.938561e-20	4.846403e-22
41	7963244	7945132	NM_002017	FLI1	0.800383	1.259968e-24	2.183146e-20	5.324747e-22
42	7963244	8146171	NM_001556	IKBKB	0.799910	1.404910e-24	2.434288e-20	5.795923e-22
43	7963244	8009205	NM_007372	DDX42	0.798555	1.916321e-24	3.320410e-20	7.721884e-22
44	7963244	8101324	NM_031370	HNRNPD	0.797799	2.276392e-24	3.944304e-20	8.964328e-22
45	7963244	8009014	NM_006852	TLK2	0.797032	2.709019e-24	4.693917e-20	1.043093e-21
46	7963244	8008113	NM_005831	CALCOCO2	0.795475	3.847498e-24	6.666559e-20	1.449252e-21
47	7963244	8070269	NM_006052	DSCR3	0.795379	3.931300e-24	6.811764e-20	1.449312e-21
48	7963244	8080991	NM_194247	HNRNPA3	0.794116	5.212363e-24	9.031462e-20	1.881555e-21
49	7963244	8166805	NM_005765	ATP6AP2	0.793738	5.670170e-24	9.824703e-20	2.005041e-21
50	7963244	8053909	NM_014014	SNRNP200	0.793720	5.693162e-24	9.864541e-20	1.972908e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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